<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30271

Description Uncharacterized protein
SequenceMAAKRLIVVVESTAAMGPYWETILRDYLDKIIRCFGENDSTVQNSCSNVEFALVSYNTHGCYSGCLVQRTGWTRDPDVFFMWLSSIPFSGGGFNDAVIAEGLAEALVMFPNSQSGDPNQQNVDMHQHCILVAASNPYPLQTPIYVPQLQNLEQSETIDSFPGNRLYDAEAVAKAFPQFSISLSVICPKELPKIKGIYNAGNRNSKAADPPVLAKTPHFLILISEGFREAQGALKVGEGYSNSSESEKVAAKWPPVMQIVQLISQAT
Length266
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.09
Grand average of hydropathy-0.094
Instability index37.35
Isoelectric point5.12
Molecular weight29141.78
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30271
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.49|      36|      38|     146|     183|       1
---------------------------------------------------------------------------
   88-  114 (27.60/11.09)	..............FSGGG...FNDaviAEGLAEALVMFPNSQS
  146-  183 (58.58/35.86)	PqlQNLEQSETIDSFPGNR...LYD...AEAVAKAFPQFSISLS
  187-  223 (53.31/27.54)	P..KELPKIKGIYN.AGNRnskAAD...PPVLAKT.PHFLILIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30271 with Med25 domain of Kingdom Viridiplantae
Unable to open file!