<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30249

Description Uncharacterized protein
SequenceMAGQQHPFPTGFPNAQQNTMRNQFGGGQMVSGLMGPQQGMVSPQQFGGGVGAGVSPNALGMLNAQQVMAQQQPMQQQMQHQQQMHLQQQQQAALAQQNNQVVGTPTTPQIPVPQSQPPAPRPPTRDLNTASLCKLGQETVQEIVSRMQELFQTLKVIQPPNGTSQGQNLSNDKKLKVQEQLKTTTVLFKRLRVIYEKCNENCQLQGMEYTHIESLIPIKEEWDMKSDEKKASEAYRLACEEHKEAMEQLVLKNRQLKEIIDHLRRIISEINTMMSMRRS
Length279
PositionHead
OrganismNasonia vitripennis (Parasitic wasp)
KingdomMetazoa
Lineage
Aromaticity0.04
Grand average of hydropathy-0.729
Instability index60.65
Isoelectric point8.88
Molecular weight31409.61
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30249
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.55|      34|      39|     116|     154|       1
---------------------------------------------------------------------------
  116-  154 (49.72/38.16)	QPPAPRPPTRDLNTASlcKLgqeTVQEIVSRMQELFQTL
  158-  191 (57.84/30.42)	QPPNGTSQGQNLSNDK..KL...KVQEQLKTTTVLFKRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.29|      19|      19|      22|      40|       2
---------------------------------------------------------------------------
   22-   40 (38.00/15.32)	NQFGG..GQMVS....GLMGPQQGM
   44-   68 (24.38/ 7.52)	QQFGGgvGAGVSpnalGMLNAQQVM
   70-   84 (27.92/ 9.55)	QQ......QPMQ....QQMQHQQQM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30249 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAGQQHPFPTGFPNAQQNTMRNQFGGGQMVSGLMGPQQGMVSPQQFGGGVGAGVSPNALGMLNAQQVMAQQQPMQQQMQHQQQMHLQQQQQAALAQQNNQVVGTPTTPQIPVPQSQPPAPRPPTRDLNTASL
1
132










Molecular Recognition Features






MoRF SequenceStartStop




NANANA