<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30238

Description Mediator of RNA polymerase II transcription subunit 8
SequenceMQREEKQLDSALEAIIMRVNDLKSAIASMIFKVEHEYETLNWPNFLDNFALISGHLTSLSKILSNEKAPNLRNLTVLPLHLSPEKDEELLRMTEGRISTFAHDLVPDYLRTKPDPLVESKMLAYEAKVANLTYDASHKQVAQYNKVINHVWDIANKAREEWESETGSRTTQTQTSSSADTHLLVYAVGNGKGLKSDAAQMVQPGVNQVGGNMMVGRPGGQPQQPGQGPMVGQMGKAPSAIKTNIKAASQIHPYGR
Length255
PositionHead
OrganismNasonia vitripennis (Parasitic wasp)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.485
Instability index29.65
Isoelectric point6.72
Molecular weight28174.68
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30238
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.15|      15|      15|     207|     221|       1
---------------------------------------------------------------------------
  207-  221 (30.97/18.33)	QVGGNMMVGRPGGQP
  223-  237 (31.17/18.49)	QPGQGPMVGQMGKAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.97|      16|      16|      56|      71|       2
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   46-   70 (19.98/13.51)	LdnfalisghLTSLSKILSNEKAPN
   71-   88 (22.98/16.63)	L.......rnLTVLPLHLSPEKDEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.62|      16|      16|     123|     138|       3
---------------------------------------------------------------------------
  123-  138 (27.18/19.37)	AYEAKVANLTYDASHK
  141-  156 (29.44/21.48)	AQYNKVINHVWDIANK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30238 with Med8 domain of Kingdom Metazoa
Unable to open file!