<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30237

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMDLLYTVNRKTFAKSSFNQESTHDEHSLCSLSSRNIVAFTATTELNDTNSKTWGCHVYVCDLNMPWHPYKVLTNKGTITALKWDLSGEKLVIADSTGLVQLWTFKDYILNEWMLIGSHYFPGEHILAVAWFHNGKRTSLVPDKKDSTLYNEKFSHLPYAPSVKQFGGRAAQGVFIVSNTGMLGAVMITQDKQNPICSATESIGNIRQRITAVDISYAKNGQFLVAVSSGSFTLPIRCFRVSIRKTDERCIIASQALPSFFLQDGAPKDDSTNATITHLKFAVSETADSLIVAANNDGNGFIEVWELSEKTHPVHKLFQSKPCGEPFKAVVWQHQALYRCLYSITAIATTKLSIVTPTSYILVTLADSSIHCLSHDGLKEIAVSSLNTSWRQDEPLNKCSRTSSTISCIDMSWLGCIFLLVDTRGSLYVYKLSPEGSAITLGYACTLLEYCLLTGLDWLDLLLCLRSSMIEALCERFDASFNRQSLPVQQYHYMQFLCIKISLYRMLVSGQSKAADLTSLFMVNSVATAFKSLLRPSDTFHDKVPAERLPSVITDNIITDVDKVLLHIEPKEFTVEPITLQSLQQLIQWVADLALNLLVRLPERRMQMKQPSGYELVQDHKALNMLRELLVIIRIWGLLRPSCLPVFLRSADNIDVLGLLFQLLSKLVQPNAETQQQVDDQLIDDCCLLPNQIMIPQVYQANSITAVATPILFYQSFPLQLEYGSEPDLTFIPELNPVEGCMHNGQIVDAVRHLYLGKQPLLVKQCTRCGAKSQVHNTTRTAAIRAWEQRWAKGCPCGGTWRIHNMNHQ
Length808
PositionTail
OrganismNasonia vitripennis (Parasitic wasp)
KingdomMetazoa
Lineage
Aromaticity0.09
Grand average of hydropathy-0.013
Instability index46.13
Isoelectric point6.89
Molecular weight90692.57
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30237
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.88|      23|      31|     749|     776|       1
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  749-  776 (32.57/28.96)	AVRhlylGKQPLLVKQCTrCGAKSQVHN
  782-  804 (49.31/26.78)	AIR....AWEQRWAKGCP.CGGTWRIHN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.09|      24|      31|     581|     611|       2
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  584-  611 (32.14/44.05)	QLIQwvADLALN....LLVRLpeRRMQMKQPS
  614-  641 (36.95/21.31)	ELVQ..DHKALNmlreLLVII..RIWGLLRPS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.88|      12|      31|     461|     472|       3
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  461-  472 (20.17/13.58)	LLCLRSSMIEAL
  495-  506 (21.71/15.23)	FLCIKISLYRML
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.78|      24|      34|     390|     421|       4
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  390-  413 (45.34/37.60)	RQDEPLNKCSRTSSTIS....CI........DMSWL
  423-  458 (31.44/10.69)	RGSLYVYKLSPEGSAITlgyaCTlleyclltGLDWL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.13|      21|      31|     653|     673|       5
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  653-  673 (34.24/20.50)	IDVLGLLFQ..LLSKLVQPNAET
  682-  704 (34.88/21.01)	IDDCCLLPNqiMIPQVYQANSIT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.07|      25|      31|     513|     537|       6
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  513-  537 (40.48/31.24)	AADLTSLFMVNSVATAFKSLLR..PSD
  545-  571 (36.59/27.48)	AERLPSVITDNIITDVDKVLLHiePKE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.37|      25|      25|     209|     233|       8
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  184-  207 (27.01/16.10)	..AVMITQDKQNPICSATESiG..NIRQ
  209-  233 (39.01/26.57)	ITAVDISYAKNGQFLVAVSS.G..SFTL
  235-  261 (34.34/22.50)	IRCFRVSIRKTDERCIIASQ.AlpSFFL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     191.25|      56|     198|      77|     133|       9
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   77-  133 (98.79/64.18)	TITALKWDLS..GEKLVIA...DSTGLVQLWTFKDYILNEWMLIGSHyFPGEHILAVAWFHN
  274-  334 (92.46/55.24)	TITHLKFAVSetADSLIVAannDGNGFIEVWELSEKTHPVHKLFQSK.PCGEPFKAVVWQHQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30237 with Med16 domain of Kingdom Metazoa
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