<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30235

Description Uncharacterized protein
SequenceMHKKGKSRLGKWTPGMSRSQKIALSDYQYDPLCVQSGGSPRPYHIKEYPKRHTWKPDISRPLSNKYFYDGVCKEKLTGVDKYWAEKHRREDKEKAKFFVKKYKRIATHQIRIAKFAHKQFRKRVDNRSVAKSVTDLRRLSIKDCQSDGTRSQKFATMTRVQKMFAKNIFVPPYKKTVVLSSKLNLLDVIERDRRIEKIGPTGCDETIGYIEPDYAPSLYSLSEEEFEAEIDEQRNALGEGTSDQYLDGEEVDAEMNELDVDDTAMEIDANIGHAKTAVEHMGPDGLLSPPASNEMPKGGPLSVGPPSVESQGLNQIYPTPPSVQMLHGDAAQPHSPHSTKPKSVLSVVEEDVERIAVPGGVATVVEIVADDPETANMKKWNKTVGKSKLSQFLAASCNDPVLSARKKKFATPITDKFKVYEPTEKVDPGMTYKPMADRNFENAPPRAFALLVRSKFHEKRMAAITAAAAAAAAAVTPVLHQPSPMVPIFQPPALPMHTSSPSVGPMAHHPMGPPGYPPITPTYPMGPRPGSNFGPPGPGYPPHPMMGPGYPGQRGPGGFVGPQNVMHPQQLQMMRMQQMMHNRQMGGMPGMPPPPPHFPPGPGPGPTGYNMPPHTGPSSVQQLNNFVNQSRFGQNTAHGMPPPVIPQSPNFNQAFNGNPMISPMQQHQFHQQQMHQQQLQSQMQRNQMQQQQQQQQQQFQQQQQIQQHQQQIQQQQQQIQQQSLQPPQPSSQQLHAEQQAQLRAAYQSVSFRNLSFLNFKFPKKLK
Length766
PositionMiddle
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.07
Grand average of hydropathy-0.802
Instability index60.57
Isoelectric point9.47
Molecular weight85655.55
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30235
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.31|      22|      23|     513|     535|       1
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  503-  532 (39.83/13.88)	VGPmahhpmgP.PGYPP...ITPTYPmGPR.PGSN
  533-  559 (36.48/ 9.47)	FGP.......PgPGYPPhpmMGPGYP.GQRgPGGF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     105.85|      17|      17|     686|     702|       2
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  621-  637 (22.19/ 6.88)	QQLNNFVNQ...SRFGQNTA
  674-  693 (26.45/ 9.61)	MHQQQLQSQmqrNQMQQQQQ
  694-  713 (28.95/11.21)	QQQQQFQQQqqiQQHQQQIQ
  714-  729 (28.27/10.77)	QQQQQIQ.Q...QSLQPPQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.24|      15|      15|     586|     600|       3
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  586-  600 (35.89/12.01)	GGMPGMPPPPPHFPP
  603-  617 (29.35/ 8.53)	GPGPTGYNMPPHTGP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.50|      10|      38|      24|      33|       4
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   24-   33 (22.05/13.83)	LSD.YQYDPLC
   62-   72 (17.45/ 9.49)	LSNkYFYDGVC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.54|      36|      70|     182|     220|       5
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  182-  220 (54.08/47.57)	KLNLLDVIERDRRIE.KIGPTGCDETIGYIEPDyapSLYS
  223-  249 (34.11/19.76)	EEEFEAEIDEQR..N.ALGEGTSDQ...YLDGE.......
  254-  288 (50.35/34.66)	EMNELDVDDTAMEIDaNIGHA..KTAVEHMGPD...GLLS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.16|      23|      38|     300|     323|       7
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  300-  323 (38.57/24.17)	PLSVGPPSVES...QGLNQIyPTPPSV
  336-  361 (35.59/17.41)	PHSTKPKSVLSvveEDVERI.AVPGGV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.37|      15|      38|     404|     418|       8
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  404-  418 (25.79/20.64)	ARKKKFATPITDKFK
  443-  457 (26.58/21.55)	APPRAFALLVRSKFH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.00|      10|      16|      95|     104|       9
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   95-  104 (17.81/ 9.38)	AKFFVKKYKR
  113-  122 (18.20/ 9.72)	AKFAHKQFRK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.43|      17|      41|       2|      18|      11
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    2-   18 (32.65/21.27)	HKKGKSRLGKWTPGMSR
   44-   60 (33.78/22.27)	HIKEYPKRHTWKPDISR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30235 with Med13 domain of Kingdom Metazoa
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