<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30234

Description Uncharacterized protein
SequenceMSRSQKIALSDYQYDPLCVQSGGSPRPYHIKEYPKRHTWKPDISRPLSNKYFYDGVCKEKLTGVDKYWAEKHRREDKEKAKFFVKKYKRIATHQIRIAKFAHKQFRKRVDNRSVAKSVTDLRRLSIKDCQSDGTRSQKFATMTRVQKMFAKNIFVPPYKKTVVLSSKLNLLDVIERDRRIEKIGPTGCDETIGYIEPDYAPSLYSLSEEEFEAEIDEQRNALGEGTSDQYLDGEEVDAEMNELDVDDTAMEIDANIGHAKTAVEHMGPDGLLSPPASNEMPKGGPLSVGPPSVESQGLNQIYPTPPSVQMLHGDAAQPHSPHSTKPKSVLSVVEEDVERIAVPGGVATVVEIVADDPETANMKKWNKTVGKSKLSQFLAASCNDPVLSARKKKFATPITDKFKVYEPTEKVDPGMTYKPMADRNFENAPPRAFALLVRSKFHEKRMAAITAAAAAAAAAVTPVLHQPSPMVPIFQPPALPMHTSSPSVGPMAHHPMGPPGYPPITPTYPMGPRPGSNFGPPGPGYPPHPMMGPGYPGQRGPGGFVGPQNVMHPQQLQMMRMQQMMHNRQMGGMPGMPPPPPHFPPGPGPGPTGYNMPPHTGPSSVQQLNNFVNQSRFGQNTAHGMPPPVIPQSPNFNQAFNGNPMISPMQQHQFHQQQMHQQQLQSQMQRNQMQQQQQQQQQQFQQQQQIQQHQQQIQQQQQQIQQQSLQPPQPSSQQLHAEQQAQLRAAYQSVSFRNLSFLNFKFPKKLK
Length751
PositionMiddle
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.07
Grand average of hydropathy-0.787
Instability index60.79
Isoelectric point9.33
Molecular weight83962.53
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30234
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.25|      23|      23|     498|     520|       1
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  488-  517 (46.50/16.37)	VGPmahhpmgP.PGYPP...ITPTYPMGPR.PGSN
  518-  544 (36.48/11.13)	FGP.......PgPGYPPhpmMGPGYP.GQRgPGGF
  617-  635 (27.27/ 6.32)	FGQ.....ntA.HGMPP.....PVIPQSP.....N
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     114.62|      18|      18|     669|     686|       2
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  636-  659 (27.86/ 8.62)	FNQ......AFNgnpmisPMQQHQFHQQQM
  660-  683 (31.55/10.75)	HQQqlqsqmQRN......QMQQQQQQQQQQ
  684-  703 (28.20/ 8.82)	FQQ....qqQIQ......QHQQQIQQQQQQ
  704-  719 (27.00/ 8.13)	IQQ......Q........SLQPPQPSSQQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     113.45|      15|      15|     571|     585|       3
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  296-  310 (24.48/ 6.63)	QGLNQIYPTPPSVQM
  313-  326 (23.90/ 6.30)	GDAAQ.PHSPHSTKP
  571-  585 (34.05/12.14)	GGMPGMPPPPPHFPP
  588-  602 (31.02/10.39)	GPGPTGYNMPPHTGP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.54|      36|      70|     167|     205|       4
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  167-  205 (54.08/39.79)	KLNLLDVIERDRRIE.KIGPTGCDETIGYIEPDyapSLYS
  208-  234 (34.11/16.54)	EEEFEAEIDEQR..N.ALGEGTSDQ...YLDGE.......
  239-  273 (50.35/28.99)	EMNELDVDDTAMEIDaNIGHA..KTAVEHMGPD...GLLS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.00|      10|      15|      80|      89|       5
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   80-   89 (17.81/11.65)	AKFFVKKYKR
   98-  107 (18.20/12.06)	AKFAHKQFRK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.98|      18|      74|     379|     420|       6
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  379-  410 (16.90/51.23)	AAScndpvlsarKKKFATPITDKFKvyeptEK
  427-  444 (32.08/10.43)	NAP.........PRAFALLVRSKFH.....EK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30234 with Med13 domain of Kingdom Metazoa
Unable to open file!