<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30227

Description Uncharacterized protein
SequenceMAWVSSEFPSTSNAECFGLNISIFEVYDGMQESSSSQCCLQLSLTYNNTTTKNVKNVVPFDAAEFFKCCVRSCLRLDNRNRYTFQFEMCFENIPLIRDVPHGLPHRRDGDKDTTWVQEINQIQGPFAGASSEKLVEGIINRLMRYLYMYKVVHQFSMAYDQHFKKYCNIEAYTFHKLVVSYGEKRDMLMILAFNVKSQTPGSGEDYFLMNFGQTMPHDEFNSTKIDWQQKPRWNPHSMMSQVLRDELKETNDLVYTMHFLCETIRPLVAIGNFGRIRFQSQKSLSQLLGPEVYFPFRLKYHLNAIDQTTIRLMQGNVILEIKLLEGTKIAVRDVSRYRPRCAGLLQFFLNLDSETTSLMVDEMAVPSSNNPQTAGPTMWTPDQFLETLDERHEEPDPRMTVPSVPILMTHDTIIKACDFQENEGRLTCPLDEYLCSISYLQRALLTLERMETSRTPVVQNSLSPGTVTITDANPDCIKFRAQQLNEEGVTTTKMVHYKIYVCPEAMTLKIRIEYDEGTNEAATPETVQAMALYFEKIVFRCGDEYALQSYILMTRLTSHGATKSMANLMSAQLKNFRNVQEPKTGTF
Length587
PositionTail
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.10
Grand average of hydropathy-0.336
Instability index41.86
Isoelectric point5.80
Molecular weight67547.59
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30227
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.55|      25|      27|     376|     402|       3
---------------------------------------------------------------------------
  376-  402 (45.60/33.86)	PTMWTPDQFLETLDerHEEPDPRMTVP
  405-  429 (46.95/28.62)	PILMTHDTIIKACD..FQENEGRLTCP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.84|      12|      27|      37|      48|       4
---------------------------------------------------------------------------
   37-   48 (23.15/13.79)	QCCLQLSLTYNN
   67-   78 (23.69/14.27)	KCCVRSCLRLDN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30227 with Med14 domain of Kingdom Metazoa
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