<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30220

Description Uncharacterized protein
SequenceMPDVVQTRQQAFREKLAQQQASAAAAAAAAAAAATAAPAAPAAAAAVSQQNPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length442
PositionTail
OrganismSus scrofa (Pig)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Suina> Suidae> Sus.
Aromaticity0.07
Grand average of hydropathy-0.343
Instability index32.82
Isoelectric point5.87
Molecular weight47433.32
Publications
PubMed=30723633

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30220
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     371.64|      40|      40|     250|     289|       1
---------------------------------------------------------------------------
   87-  122 (35.87/17.82)	..........PNKatVLRGHESE...........VFICAWNPVS.........dlL.ASGS.GDSTAR
  141-  178 (43.09/22.89)	HCirEGGHDVP....S....NKD...........VTSLDWNSDG.........tlL.ATGS.YDGFAR
  179-  208 (30.89/14.31)	I...WTEDGNLAS..TLGQHKGP...........IFALKWNKKG..........nY............
  209-  260 (44.42/23.82)	IL..SAGVDKTTI..IWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCS.TDMCIH
  261-  302 (63.35/37.13)	VC..RLGCDRPVK..TFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DDMTLK
  303-  353 (58.24/33.54)	IW..SMKQDTCVH..DLQAHSKE...........IYTIKWSPTGpatsnpnsnimL.ASAS.FDSTVR
  357-  395 (50.14/27.84)	VE..RGVC...IH..TLTKHQEP...........VYSVAFSPDG..........kYlASGS.FDKCVH
  396-  437 (45.62/24.67)	IW..NTQSGSLVH..SYRG.TGG...........IFEVCWNARG........dkvG.ASASdGSVCV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.78|      18|      21|      44|      61|       2
---------------------------------------------------------------------------
   44-   61 (29.58/18.76)	AAAVSQQNPPKNGEATVN
   67-   84 (31.20/20.16)	AHAINNHSKPMEIDGDVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30220 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PAAPAAAAAVSQQNPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKAT
38
91










Molecular Recognition Features






MoRF SequenceStartStop




1) AAAAAAAAAATAAPAAPAAAA
25
45