<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30211

Description Cyclin dependent kinase 19
SequenceMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAMDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYFQEDPLPTSDVFAGCQIPYPKREFLNEDEPEEKGDKNQQQQNQHQPQAAPQAAPQQQQQQQQNSTQTNGTAGGGGTGGGGTGAGLQHSQDSSLNQVPPNKKPRIGPSGTNSGGPVMPTDYQHSSSRLSYQSNIQGSSQTQSTMGYSTSSQQSSQYHQSHQSHRY
Length438
PositionKinase
OrganismPelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Testudines> Cryptodira> Trionychia> Trionychidae> Pelodiscus.
Aromaticity0.08
Grand average of hydropathy-0.724
Instability index58.89
Isoelectric point8.79
Molecular weight49727.58
Publications
PubMed=17381049
PubMed=23624526

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30211
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.46|      24|      41|      91|     114|       1
---------------------------------------------------------------------------
   91-  114 (42.15/31.98)	DLKPANILVMGEGPE.....RGRVKIADM
  129-  157 (39.30/29.31)	DLDPVVVTFWYRAPElllgaRHYTKAMDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.27|      23|      41|     254|     279|       2
---------------------------------------------------------------------------
  254-  279 (33.77/29.56)	KLLTMD.PTKRITSEQALQDpyfQEDP
  297-  320 (37.50/22.40)	EFLNEDePEEKGDKNQQQQN...QHQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.64|      31|      32|     332|     362|       3
---------------------------------------------------------------------------
  332-  362 (56.89/36.93)	QQQQQNSTQTN..GTAGGGGTGGGGT..GAGLQHS
  363-  397 (49.75/31.32)	QDSSLNQVPPNkkPRIGPSGTNSGGPvmPTDYQHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.71|      14|      17|     399|     412|       7
---------------------------------------------------------------------------
  399-  412 (24.98/14.70)	SRLSYQSNIQGSSQ
  415-  428 (23.73/13.61)	STMGYSTSSQQSSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30211 with CDK8 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TKRITSEQALQDPYFQEDPLPTSDVFAGCQIPYPKREFLNEDEPEEKGDKNQQQQNQHQPQAAPQAAPQQQQQQQQNSTQTNGTAGGGGTGGGGTGAGLQHSQDSSLNQVPPNKKPRIGPSGTNSGGPVMPTDYQHSSSRLSYQSNIQGSSQTQSTMGYSTSSQQSSQYHQSHQSHRY
261
438










Molecular Recognition Features






MoRF SequenceStartStop




1) AGLQH
2) GPVMPT
3) LNQVPPNKKPRIGPS
4) QYHQSHQSHRY
5) RLSYQSNIQGS
6) STMGYSTSS
357
387
367
428
400
415
361
392
381
438
410
423