<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30207

Description Mediator complex subunit 23
SequenceMFMDTPEDENTKLISCLGAFRQFWSSLSQESHEQCVQWIVRFIHSQHSPKRISFLYDCLAMAVETGLLPPRMVCESLINSDTLEWERTQLWALTFKLVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVVAYILERNACLLPAYFAVTEIRKLYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAMCNSWKLDPSTLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNILGLNKQHKQRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKECIPVPDINKPQSTHAFAMTCIWIHLNRKAHSDNSKLQIPIPHSLKLHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPMGVLVETIYGNGNMRIPLPGTNCMASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSLALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWASHTLSCFPAPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSMQGSPPLFLCLLWKMLLETDHINQIGYRVLERIGARALVAHVRTFADFLVYEFSTSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDFVKENSPEHWLQNDWHTKHMSYHKKYPEKLYFEGLAEQVNPPVQIQPQYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYERHLRERTNLKRKLVHAIIGSLKDNRPQGWCLSDTYIKSAMNVREDNPWIPDDTYYCKLIGRLVDRLASHLVHFQTATGDSMSFLTQLPMLFMLPVLNSWLWLFQERMWAMHF
Length1101
PositionTail
OrganismPelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Testudines> Cryptodira> Trionychia> Trionychidae> Pelodiscus.
Aromaticity0.10
Grand average of hydropathy-0.048
Instability index41.88
Isoelectric point8.25
Molecular weight126859.13
Publications
PubMed=17381049
PubMed=23624526

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30207
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     320.35|     112|     168|     644|     810|       1
---------------------------------------------------------------------------
    5-   65 (52.61/10.91)	......................................................TPEDENT.KLISCLGA...........................FRQfWSSLSQESHeqcvqwIVRFIHSQHSPKrisfLYDCL..AMAVET
  526-  599 (97.97/49.49)	LAHAKSSLA.....LAPALVETYSRLLVYMEI..ESLGIKG.FISQLLPTV..FKSHAWGIlHTL......LEMFsYRMHHIQPHYRVQL.......................................................
  645-  776 (169.76/169.10)	LSDPKTVLSaeseeLNRALILTLARATHVTDFftGSDSIQGtWCKDILQTImsFTPHNWAS.HTLSCFPApLQAF.FKQNNVPQESRFNLkknveeeYRK.WKSMTNEND......IITHFSMQGSPP....LFLCLlwKMLLET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.17|      15|      19|    1007|    1024|       2
---------------------------------------------------------------------------
 1007- 1024 (22.97/26.12)	IGSL....KDNrPqgWCLSDTY
 1025- 1043 (26.21/15.58)	IKSAmnvrEDN.P..WIPDDTY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     294.92|      93|     739|     164|     262|       3
---------------------------------------------------------------------------
  164-  262 (151.86/118.20)	RKLYPEgKLPHWLLGNLVSDFVDtFRP...TARINSICGRcsLLPVVNNsgAMCNSWKLDP.....STLRFPLKGLLPY.DKD...LFEPQTALLRYVLEQP.YSRDMVCNI
  901- 1006 (143.06/90.70)	HKKYPE.KLYFEGLAEQVNPPVQ.IQPqylPIYFGNVCLR..FLPVFDI..VIHRFLELLPvskslETLLDHLGGLYKFhDRPvtyLYNTLHYYERHLRERTnLKRKLVHAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.14|      10|      31|     315|     324|       4
---------------------------------------------------------------------------
  315-  324 (18.69/10.20)	IFFVLFQFAS
  348-  357 (19.45/10.92)	LMWVLLQFIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30207 with Med23 domain of Kingdom Metazoa
Unable to open file!