<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30206

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWRERWSDYQWAINMKKFFPKGATWDILNLAEALLDQAMIGPSPNPLILSYLKYAISSQMVSYSTVLTAISKFDDFSRDLCVQSLLEIMDMFCDRLSCHGKAEECIGLCRALMSALNWMLRCAAFYVEKVKELLDQAGGESQLKMCLERLEKVVGSTKNRALIHIGKLEETSSWSAVEQSLLKLGENLGNLSNPQLRSQADECISLIKSIPTMLSAHSEQLNKTGFPTVHAVVLLEGTMNLTGETHPLVEQLMMVKRMQRIPSPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYPQGEKDFTEDVNCAXXXXXXXXRALSAFSLHSSCDCTSLLLQECSKQGLLSEANMTNLVAKRTADREHAPRLKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFTKHISGEGSKAASVRALLFDISFLMLCHVAQTYGSEVILSESSPTGEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNSSSEMKLVQMKWHEACLSISAAILEILNAWENGVLTFESIQKITDNIKGKVCSMAVCAMAWLVAHVRMLGLDERDKSLQMIRQLATSLQSENTLQFYNERVVIMSSILEHMCADVLQQTATQIRFPSTGTDPIPYWNLLPPKKPIKEVLTGVFTKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLVKELLKETRKEHTLRAVELLYSIFCLDMQQLTLSLLGHILPSLLTDSSKWHTLMDPPGKALAKLSVWCALSSYSSHNKGQASARQKKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEEEANVLSSPNRSMSSSLSASQLHTVSMRDPLNRVLATLSLLISSILGAKTAGTHTQFVQWFMEECVDCLEQGSRGSILQFMPFTMVSELVKVSTMSSPKIVLAITDLSLPLGRRVAAKAIAAL
Length986
PositionTail
OrganismPelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Testudines> Cryptodira> Trionychia> Trionychidae> Pelodiscus.
Aromaticity0.07
Grand average of hydropathy-0.002
Instability index48.60
Isoelectric point7.08
Molecular weight108956.71
Publications
PubMed=17381049
PubMed=23624526

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30206
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.51|      47|     158|     253|     324|       1
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  274-  324 (81.26/86.35)	PSPLFVL.......EIWKACFVGLIESPEG.......................TEELKWTAFTFLKipqvLVKLKKYPQGE
  402-  478 (64.26/29.13)	PNPGLILraeptvtNILKTMDADHSKSPEGllgvlghmlsgksldlllaaaaaTGKLKSFARKFIK....LNEFTKHISGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.76|      25|     158|     684|     708|       2
---------------------------------------------------------------------------
  684-  708 (47.53/26.97)	FPSTGTDPIPYWNLLPPKKPIKEVL
  845-  869 (42.23/23.23)	FPLDDTQPSKLMRLLSSNEEEANVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.81|      16|     194|     736|     751|       5
---------------------------------------------------------------------------
  736-  751 (30.36/19.01)	GGVYWFCN.NLVKELLK
  938-  954 (23.45/13.05)	GSILQFMPfTMVSELVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     308.47|      80|      97|      46|     128|       7
---------------------------------------------------------------------------
   46-  128 (131.94/94.67)	LLDQAMiGPSPNPLILSYLKYAISSQmvSYSTVLTAISKFDDFSRDLCV.QSLLEIMDMFCDRLS...CHGK.....AEECIGLCRALMSAL
  145-  226 (116.75/73.85)	LLDQAG.GESQLKMCLERLEKVVGS...TKNRALIHIGKLEETSSWSAVeQSLLKLGENLGN.LSnpqLRSQ.....ADECISLIKSIPTML
  871-  929 (59.78/33.76)	.........SPNRSMSSSLS...ASQ.......LHTVSMRDPLNRVLAT.LSLL.ISSILGAKTA..gTHTQfvqwfMEECV..........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30206 with Med24 domain of Kingdom Metazoa
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