<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30205

Description Uncharacterized protein
SequenceIHNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTSNEELAKRAKKLLRNWQKLIEPVTQNESVPRGLPNPPGSANGGAHNCKPEVPSAVVTGSKPINERKXNPPKTEKPGNRKRKGEHRDGHQGPPPKVSKASHEVLQNSSPPPTNGIAGSPENFPSPIDVNPYAGPESSRTEHSENDKHSKIPINAVKPHTSPPGLVKPSSTSSLLKTAVLQQHDKLEETTGQHQPKSPRCSSFSPGNIRHDTFARQHITYSPKGSVPSPSQRSQFLDSAQVPSPQPPSLMQPSTPPMPAKRLEVSQQSGTEISPHWQEQAPLESQHRHTAGTLQHTSPSCKTNLHPAESLTPYVGFSPDASKMDSDDAASGSDSKKKKRYRPRDHTVNLDGQLIEGGVKPVRLKERKLTFDPMTGQIKPLTQKDSLQVEIPAATEQHRTETDKQEQKPNLQSPFEQTNWKELSRNEIIQSYLNRQSSLLSSSGVQTPGAHYFMSEYLKQEESTRREARKTHVLAPNSKPTDLPGVTREVTSDDLNRIREHHWPGVNGCYDTQGNWYNWTQCISLDPHGDDGRLNILPYVCLD
Length580
PositionUnknown
OrganismPelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Testudines> Cryptodira> Trionychia> Trionychidae> Pelodiscus.
Aromaticity0.04
Grand average of hydropathy-1.001
Instability index60.35
Isoelectric point9.07
Molecular weight64231.96
Publications
PubMed=17381049
PubMed=23624526

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30205
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.02|      20|      23|     259|     278|       1
---------------------------------------------------------------------------
  110-  128 (21.69/ 7.34)	.P..KTEKPGNRKRKGEHRDGH
  259-  278 (33.37/15.84)	SP..KGSVPSPSQRSQFLDSAQ
  311-  332 (24.96/ 9.72)	SPhwQEQAPLESQHRHTAGTLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.11|      12|      87|     196|     207|       2
---------------------------------------------------------------------------
  196-  207 (23.11/ 7.60)	PHTSPPGLVKPS
  280-  291 (23.00/ 7.53)	PSPQPPSLMQPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.33|      47|      87|      44|     106|       3
---------------------------------------------------------------------------
   44-  106 (68.53/52.71)	ELAKRAKKLLRNwqkliepvtqnESvprglPNPPGSANGGAHNCKPEV...PSAVVTGSK............PINERK
  134-  195 (70.80/30.04)	KVSKASHEVLQN...........SS.....PPPTNGIAGSPENFPSPIdvnPYAGPESSRtehsendkhskiPINAVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.65|      15|     112|     228|     249|       5
---------------------------------------------------------------------------
  220-  242 (19.41/11.65)	QHDkleetTGQHQPKSPRcssFS
  360-  379 (16.24/10.29)	KMDsddaaSGSDSKKKKR...YR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30205 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EETRLGKLINDVRKKTSNEELAKRAKKLLRNWQKLIEPVTQNESVPRGLPNPPGSANGGAHNCKPEVPSAVVTGSKPINERKXNPPKTEKPGNRKRKGEHRDGHQGPPPKVSKASHEVLQNSSPPPTNGIAGSPENFPSPIDVNPYAGPESSRTEHSENDKHSKIPINAVKPHTSPPGLVKPSSTSSLLKTAVLQQHDKLEETTGQHQPKSPRCSSFSPGNIRHDTFARQHITYSPKGSVPSPSQRSQFLDSAQVPSPQPPSLMQPSTPPMPAKRLEVSQQSGTEISPHWQEQAPLESQHRHTAGTLQHTSPSCKTNLHPAESLTPYVGFSPDASKMDSDDAASGSDSKKKKRYRPRDHTVNLDGQLIEGGV
2) PVRLKERKLTFDPMTGQIKPLTQKDSLQVEIPAATEQHRTETDKQEQKPNLQSPFEQTNW
3) TRREARKTHVLAPNSKPTDLPGVTREVTSDDLNR
25
398
501
396
457
534










Molecular Recognition Features






MoRF SequenceStartStop




NANANA