<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30203

Description Mediator complex subunit 13 like
SequenceMVEEGLWENGLSYECRTLLFKAIHNLLERCLMDKNFMRIGKWFIRPYQKDEKPVNKSEHLSCAFTFFLHGESNVCTSVEIVQHQPIYLINEEHIRMALSSPAPFQVLLSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLRKKEGLKEEEELGYDDNFPVAVEVIVGGVRMVYPSAFVLISQNDIPVSQSASSAGGHIIMCQQGLGSMKDPSNCGMPLTPPTSPEQAMIGENGGTQNSISHTVSQEGTFTLHSPKKSGKISPKFHNRMVHRVWKECMLNRSQSKRSQITTSNLEEEVPTNTVSWDFMDPVERVSCSCSRHKLFKQRCAIGPSRPPMISQPGFSVGSSSSSSLPPPASSKHKTTERQEKGEKLQKRPMMPFHHRPSVTEELRLEQDTSGQKLGLTGMERSLEVSNSRKYEKQLSIPSRNPNKQINLNPMDSPHSPTSPLPPTLSPQPRGQEAENLDPSTVAGNPALYSNGLDLQPLPSLDDRTVLVGQRLSLMAEVSETAFYYGIIQNSESSDKWQSYVLPSSDDPEFKPPELLCERYDTKVEVNSDNTALKRLLAQPNKRFKILEDNKSVQTLNYLDPLPLIQQSGEGLGDVSDPYTFEDGDIKYSFTGNKKCKLGTEKEPLKKNKSEDGLGTKEIPTASHSTPVPDGKDAMSIFSSAPKADTQQDCAAGRLGSSSLTQVTDLAPSLHDLDNIFDNSDEDELGVVSAALRSSKMLAVGAEERPLGKDGRTAVTYPPTVADLQRMFPTPPSLEHHPAFSPVMNYKDGISSETVTALGMMESPMVSMVPTQLTEFKMEIEDGLGSPKPEEIKDFSYVYKVPSFQSFVGSSMFAPLKILPSQCLLPLKIPDACMFRPSWAIPPKIEQLPMPPAATFIRDGYNNVPSVGSLADQDYLQMNTPQMNTPVTLNSAAPASNSGAGVLPSPATPRFSVPTPRTPRTPRTPRGGGTARGQGSVKYDSTDQGSPASTPSTTRPLNSVEPATVQPIPEAHSLYVTLILSDSVLNIFKDRNFDSCCICACNMNIKGADVGLYIPDSSNEDQYRCTCGFSAIMNRRLGYNSGLFIEDELDIFGKTSDTGQAAERRLMMCQTTLIPQMGEGARRGQEPPASLLLLLQNQHAQPFTSLSCLDYMSSNNRLTLPYMNWSYDRVQADTNDSWIECFNALEQGRQYVDNPSGGKVDEALVRSATVHSWPHSNVLDISMLSSQDVVRMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGTYGSEESPEPLPIPTLLVGYDKDFLTISPFTLPFWERLLLDPYGGHRDVAYIVLCPENEALLDGAKTFFRDLSAVYEMCRLGQHKPICKVLCDGIMRVGKTMAQKLTDELVSEWFTQPWSSEECDNHSRLKLYAQVCRHHLGK
Length1409
PositionMiddle
OrganismPelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Testudines> Cryptodira> Trionychia> Trionychidae> Pelodiscus.
Aromaticity0.07
Grand average of hydropathy-0.471
Instability index57.46
Isoelectric point5.77
Molecular weight156360.60
Publications
PubMed=17381049
PubMed=23624526

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30203
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     421.04|      91|      93|     327|     418|       1
---------------------------------------------------------------------------
  178-  245 (93.37/44.45)	........PSAFV..LISQND.IPVSQSASSA......GGHIIMCQQGLGS..MKDPSncgMPLT....PPT.SP....EQAMI.GE.N.G..GTQNS....ISH
  247-  304 (57.77/24.32)	................VSQEGtFTLHSP...................KKSGKISPK.......FHNRmvHRV.WKECMLNRSQS.KRsQITTSNLEEEV..P.TN
  327-  418 (155.66/83.65)	FKQRCAIgPSRPP..MISQPG.FSVGSSSSSSLPPPASSKHKTTERQEKGEKLQKRPM...MPFHHR..PSV.TEELRLEQDTS.GQ.KLGLTGMERSL..EVSN
  422-  511 (114.23/56.47)	YEKQLSI.PSRNPnkQINLNP.MDSPHSPTSPLPPTLSPQ....PRGQEAENLDPSTV...AG...N..PALySNGLDLQPLPSlDD.RTVLVGQRLSLmaEVSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.20|      34|      48|     833|     868|       3
---------------------------------------------------------------------------
  833-  868 (57.59/34.06)	PSFQSFV..GSSMFAPLKILPSQCLLPLKIPDacMFRP
  882-  917 (57.61/28.30)	PPAATFIrdGYNNVPSVGSLADQDYLQMNTPQ..MNTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     334.77|     111|     479|      41|     165|       4
---------------------------------------------------------------------------
   41-  165 (171.17/124.72)	KW..FIRPYQKDekPVNKSEHLSCA.FTFFLHGESNvCTSVEIVQHQPiylinEEHIRMaLSSPAPFQVL..LSPYGLNgTLTGQAY.KMSDPATrklIEEWQYFYPMVLRK.......KEGLKE...EEELGYDDnFPVA
  527-  653 (163.60/86.80)	KWqsYVLPSSDD..PEFKPPELLCErYDTKVEVNSD.NTALKRLLAQP.....NKRFKI.LEDNKSVQTLnyLDPLPLI.QQSGEGLgDVSDPYT...FEDGDIKYSFTGNKkcklgteKEPLKKnksEDGLGTKE.IPTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.97|      33|      49|     663|     695|       5
---------------------------------------------------------------------------
  663-  695 (55.14/31.73)	KDAMSIFSSAPKADTQQDCAAGR..LGSSSLTQVT
  713-  747 (46.83/25.92)	EDELGVVSAALRSSKMLAVGAEErpLGKDGRTAVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.62|      23|    1327|      13|      40|       6
---------------------------------------------------------------------------
   13-   40 (32.09/40.35)	YE.CRTLLFKAIHNLLerClmDkNFMRIG
 1342- 1365 (43.53/30.33)	YEmCRLGQHKPICKVL..C..D.GIMRVG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30203 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DPSNCGMPLTPPTSPEQAMIGENGGTQNSISHTVSQEGTFTLHSPKKSGKISPKF
2) GSLADQDYLQMNTPQMNTPVTLNSAAPASNSGAGVLPSPATPRFSVPTPRTPRTPRTPRGGGTARGQGSVKYDSTDQGSPASTPSTTRPLNSVEPATVQ
3) GTEKEPLKKNKSEDGLGTKEIPTASHSTPVPDGKDAMSIFSSAPK
4) RCAIGPSRPPMISQPGFSVGSSSSSSLPPPASSKHKTTERQEKGEKLQKRPMMPFHHRPSVTEELRLEQDTSGQKLGLTGMERSLEVSNSRKYEKQLSIPSRNPNKQINLNPMDSPHSPTSPLPPTLSPQPRGQEAENLDPSTVAGNPALYSNGLDLQ
214
899
630
330
268
997
674
487










Molecular Recognition Features






MoRF SequenceStartStop




NANANA