<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30134

Description Uncharacterized protein
SequenceMSFSELTRNSFQSGISAAKRWCSQWLSLCKLFVSKHLTQVSHQDVESALSNSVLALFRNYPGDPALNAYLQYTIQDGILSLATFISTFLSAARSLELQNVSTLDMLCRLALECHYSSGMPPIGSVVSFTQPLPVVFSTVLDATALLRIAHTLPQTHLHQLTNSASELLILLLSTVGDVSQIPTPLGIMFLQDMAEMTPAGFRLSPATRHVLDQFTFALHNAIGDDAARETQMMHTLQLTFGKGDAVSGTSSGKDIITCGLLLHNLVTHRASHFGSGDGRRAIVLLVALVRWTAWTPATFYTQLMQSAVACFSQATSHSSSRTAALWRAFIVGRLPQLLSMFEKSVDLDGTSEADWRSAMQIAVTSLFQRADLLSRCDSVYCHPSTEQNNHSHNSQHNPGQPFMTELLHQLLAVGLLEQAVVSSFNPNLQNDFHSRMQTEAQEHGSDLESYLESRFSTDMNVDDAMPILEKIWKDPCSHAAFADIAKKRFKSYSSSNDIESLGHMCKILYSHEHSLEILSLHVTIQDLLSRALAIVEDYDCETVGDPQAAVSHYGNVVLFAQTALIKFNLENSKFTLGERTLSTDLLNSAAYMRRPDELEGEDEAAFKSWQKTLFDTGSEGIEDSILRNTRPHSLLRIAATLLLGSINAYSSKKLDKDALYNGVSYFQSPLLNWTTAGVIRALLREIKQRAVAVSPHIEILQTLLQSPSCPGPVLRLSAHQVLRTLPPKTTPQPSQSPMKAFDPMLLRKLALQALGLPAPAEEDAATEPPRPQPLQITDPVVHAIRGSLNDARTGKAPSLDVERCLLFTNPIKFLTVFWMELTLASAMGELEAPRRLATFVLGTPRAPQSPPLLPVFLHVVLPTIIASADNLAPAEQTIMVELIVGIISSALTAALFVEWALLSVCKEQRLVLGQPALTMARRLSGELRKAHSPTSTVIMQRLGASSSFMANFPTFMTE
Length958
PositionTail
OrganismPhanerochaete carnosa (strain HHB-10118-sp) (White-rot fungus) (Peniophora carnosa)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Phanerochaetaceae> Phanerochaete.
Aromaticity0.07
Grand average of hydropathy0.030
Instability index50.80
Isoelectric point6.15
Molecular weight105257.53
Publications
PubMed=22937793

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30134
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     236.47|      76|      85|     754|     836|       1
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  754-  836 (123.43/100.85)	LGLP.APaeedaATEPPRPQPLQITDPVVHAIRGSLNDARTGKAPSLDVerCLLFTNPIKFLTVFWMELTLAS....AMGE..LEAPRRL
  841-  923 (113.04/76.25)	LGTPrAP.....QSPPLLPVFLHVVLPTIIASADNLAPAEQTIMVELIV..GIISSALTAALFVEWALLSVCKeqrlVLGQpaLTMARRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.69|      21|     142|     144|     164|       2
---------------------------------------------------------------------------
  144-  164 (37.26/21.35)	ALLRIAHTLPQTHLHQLTNSA
  287-  307 (40.43/23.74)	ALVRWTAWTPATFYTQLMQSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.85|      32|      84|     322|     354|       3
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  322-  353 (54.85/27.01)	TAALWRA...FIVGRLPQ...LLSMFEKSVDLDGTS....EA
  355-  387 (31.83/14.34)	....WRSamqIAVTSLFQradLLSRCD.SVYCHPST....EQ
  404-  440 (41.17/15.26)	TELLHQL...LAVGLLEQ..aVVSSFNPNLQNDFHSrmqtEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.54|      22|      31|     223|     244|       6
---------------------------------------------------------------------------
  223-  244 (40.17/24.91)	GDDAARETQMMHTL....QLTFGKGD
  252-  277 (33.38/19.48)	GKDIITCGLLLHNLvthrASHFGSGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.03|      16|      31|     705|     720|       7
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  705-  720 (31.95/18.17)	QSP.SCPGP.VLRLSAHQ
  735-  752 (20.08/ 8.73)	QSPmKAFDPmLLRKLALQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30134 with Med5 domain of Kingdom Fungi
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