<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30129

Description Uncharacterized protein
SequenceMATGDKDIPPIYESQPPKWLPKAHGSADLGYVSFFPPRPDQEEDILTVSNVKDGFQQPPVVPAETYTARDTVKPRLSTENALSELEDLMAQIFARKAENVPPIPPSSFKLPSRVTMNDAKREAWFTDLANPNVPLHKLSKSVPHGAKGHDLLDLLQQNNVAIPRAVWFLRVFGGNETAGLRNRPQYIPTQYSVDWANVVCGYLKKQLTEIALPMAPRPGLNVKQSFKGVLSDQASRDRWVSRFTYSLSLLRVFYAEGMVDHRTFLAWVVQQCGTCNLAQLGFVIRLADEYLDGMLVCHALVRPLVEACTVRLSEIRSATVRDHLDNVEHTLKAVLLRCLLGLRDGFVNPRLWAQHSLLFEEVLREHISRTSSESRNSRGTPALNDSFLAAYEDVKRRNDAMLFRNIPPRVLGSLSSALSDIKLLNSLSCTSSMESCPFFDGILDPSPAFVRKLDILLTWSVTPLQYGDHRPHAAASLLRLWRDRAEERAARRERESPADDVQDHLFDWLDTSEVAGEDNSLASVALLFDQFVKNGLFDYGQYIQHLIARGEQGLSFTDTTPSRHRRFLQWIPLHSSSSPLISQRKVALYGLRVRETPEDRKEREIRRQIRAVLPELFGGEVPDQAVASVDIAAQVPGIFTATRFEQVRLFRGWLLPVLKKAVSAHTKGTEYPPALRAYCTAVTVMARSRHYGIILELTLFALEHAMSNEFLLAILQTLRQHVEVWGCMNKMKDIEEALYATHNFWKTRGVQSRDLLTLLFAIDNGQHLDQVTRAQLIADHEQFIRAFHPVGERPVVVPAVLPEILLLVTDPNPETPSILANSLWYKYRSAPDWAWKVWDNTVASLRQIPSMIEDPAGRRSCALRYSTFLIHVDRHLATGLDEHVLGWLRGSGKNEVAALSTETWDLFVVVLLHLASSNALAVTSLLEGLVYPAWQTASTLSSPQQGASMEIILPVVNDLCTRLLLIDGTDSEVPPLDFLQYHGLQTGRRDVYRGPYFAALVKIIPTLVLLEHNINIPEHLRQGCGVLRVALCSSSVFRMGTFRELDTVHDAFQAVLANPEVPEEKHEPLIAALKLIFNEGQQEVADPYPGWGTLSSFLSPWKLAATSIELRFTMRQFNEALQRPAYKDRAERSLSKLAITLFGQGMDSEQADFVAEMIRGVNPVVVGKFVNAGLQRIAEILKEGTPLQITEDLHRNVGKAGKVLRLLTNLVEPMRAPASTTSLPQVDSPAPRDLISVVQGLLQGIADRLSSSDIPESSVISDHDSVRRMIAATIFLARVVQFVLGFPGAWMQWAKDHCENLSQILSRLILVFGSGTTLDVIAFPLLLDTLYYLLDEIPVDPKATTIDPFRCYPVYELRSLPLDMPFEYRSRIRALIPYVEPNLAVADLAYVSRDPSGSISSSEVSLVHNKPWEWTEYLGDVSGADTAKENVETRALQPSHYSTDQQPVIRNSSSLSLDLFAARVIGTSSAPAEDARVESELRMLQDDFLAESVFRRDFRETRVDPSVIGAKVSPAFNVEDGDAGNALAPSGSDRRSSSRAGSPSGSVRSRASIQPSTASGSRQTSPATTRGSQQRSHSGLSKLAGTSMVEPIDVDMLDLTGAASRNTAGTKRKTAEVDDDDEVEIVERSAVASQSKRVKGKPKSKNR
Length1647
PositionKinase
OrganismPhanerochaete carnosa (strain HHB-10118-sp) (White-rot fungus) (Peniophora carnosa)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Phanerochaetaceae> Phanerochaete.
Aromaticity0.08
Grand average of hydropathy-0.184
Instability index50.45
Isoelectric point6.23
Molecular weight183282.70
Publications
PubMed=22937793

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30129
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     146.46|      39|      40|      58|      96|       1
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   16-   53 (49.35/25.50)	PPkWLPKAHGSADlgyvSFFPPRPDQE........EDILTVSNVKD
   58-   96 (63.59/35.02)	PP.VVPAETYTAR....DTVKPRLSTENALSE..LEDLMAQIFARK
  101-  128 (33.53/14.92)	PP..IPPSSF........KLPSRVTMNDAKREawFTDL........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.00|      26|      35|     254|     280|       2
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  254-  280 (43.83/32.76)	YAEGMVDHRTFLAWVVQQCgTCNLAQL
  290-  315 (45.18/28.56)	YLDGMLVCHALVRPLVEAC.TVRLSEI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.68|      47|     103|     804|     858|       3
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  804-  858 (70.10/59.38)	ILLLVTDPNPETPSILANSLWYkyrsaPdwAWKVwDNTVASLRQIPSM......IEDPAGR
  910-  962 (74.58/40.53)	VLLHLASSNALAVTSLLEGLVY.....P..AWQT.ASTLSSPQQGASMeiilpvVNDLCTR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     252.20|      83|     107|     456|     550|       4
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  456-  550 (117.96/107.72)	LLTWsvTPLqYGDHRPHAAASLLRLWRDRAEERAA.RRERE..SPADDVQDHLFDwldtSEVagEDNSLASVALLfDQFvkNGLFDYGQYIQHLIARG
  567-  652 (134.24/83.40)	FLQW..IPL.HSSSSPLISQRKVALYGLRVRETPEdRKEREirRQIRAVLPELFG....GEV..PDQAVASVDIA.AQV..PGIFTATRFEQVRLFRG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     419.85|     107|     107|    1332|    1438|       5
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 1211- 1328 (96.63/60.79)	................VEPMRA.PA.STTSLPqVDSPAP.....RDLI.SVVQGLLqGIADRLSSSDIPESSVISDHDSVrrmiaatiflarvvqfvlgfpgawmqwAKD.HCENLSQILSRlilVFGSGTTLDVIAFPLLLD
 1332- 1438 (181.69/122.34)	YLLDEIPV..DPKATTIDPFRCYPVYELRSLP.LDMPFEYRSRIRALI.PYVEPNL.AVADLAYVSRDPSGSISSSEVSL...........................VHN.KPWEWTEYLGD...VSGADTAKENVETRALQP
 1441- 1543 (141.52/93.27)	YSTDQQPVirNSSSLSLDLFAAR.VIGTSSAP.AE.DARVESELRMLQdDFLAESV.FRRDFRETRVDP..SVIGAKVSP...........................AFNvEDGDAGNALAP....SGSD...RRSSSRAGSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.89|      28|      42|     991|    1018|       7
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  991- 1018 (47.74/33.22)	VYRGPYFAALVKIIPTLVLLEHNINIPE
 1036- 1063 (48.15/33.58)	VFRMGTFRELDTVHDAFQAVLANPEVPE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30129 with Med12 domain of Kingdom Fungi
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