<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30127

Description Uncharacterized protein
SequenceMQSPADPAASSSSSSSSGEPKTQSPAVPDAAAAAAAASSDLQALKGQISLLTELGNRVESLRQTPSYLRLGAVAPSTSPIASNVSPASQAALISHGFEGIKLFLEKVQSDPVQDVLRKASESEAEDKRNLDFNHPRRNLKHNRQPSPDSPQPYRTLQPKTSLFPPDDAAAPTPLRVDDLVHYIRSYNTTNAHRLHVWTATPRPSRLNLPSELMVRFTIRDVVTVYLTLGSMPPESTIVVEGATAFGPREKKPPHSQSSYVVYQRLSQHLAKMLQSKPQASFQLVMVLLASYEDLFVRRCSACQRVTSAEGHLPPAARVWVPSEREGEEGHWDAKHPSCLQS
Length341
PositionTail
OrganismPhanerochaete carnosa (strain HHB-10118-sp) (White-rot fungus) (Peniophora carnosa)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Phanerochaetaceae> Phanerochaete.
Aromaticity0.06
Grand average of hydropathy-0.466
Instability index68.49
Isoelectric point8.71
Molecular weight37207.45
Publications
PubMed=22937793

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30127
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     259.75|      69|     135|       6|      76|       1
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    6-   74 (108.44/58.77)	DPAASSSSSSSSGE...PKTQSPAVPDA.AAAAAAASSDLQALKGQI.SLLTELGNRVESLRQTPS......................YLRLGAVA
   88-  143 (58.38/27.43)	SQAALISHGFEGIKlflEKVQSDPVQDVlRKASESEAEDKRNLDFNH.PRRNLKHNR.......................................
  145-  232 (92.93/51.43)	.PSPDSPQPYRTLQ...PKT.SLFPPDD.AAAPTPLRVD..DLVHYIrSYNTTNAHRLHVWTATPRpsrlnlpselmvrftirdvvtvYLTLGSMP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30127 with Med27 domain of Kingdom Fungi
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