<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30121

Description Uncharacterized protein
SequenceMDSFFKKSFLDTKPVVGQLSKKDSSDHASPSQPLTIAIAISGSSKSKNVVKWALNKFGSDKNVVFKLIHVHPKLTSLPTPSGNTVPISEAPEDVAATYRQNVMQETKETLLKPFKKMCERKKVAVELQVLESNRVAMAITKEVNEHLISNLVIGRSSHGNLSRYHDITAELSAFVSNLCTVYVVSKGAYILSKDRVSSDTERHETLRDSGNERTDSSSWSSGSGPNSDVMSNALKSNPHSLSNKRLQHLPTIIRGVSVPMETSSANSDDTRSMSSDVAEGVSKRSSPETSHSVSWNPRLRDFDDRKDAMNSLSMSSNHGYGNVTPGGDHYFSDDQETLKEITKLRAELRHAQELYAVAQVETLDASRKLNELKFEELKLMEHETKGLAEEETQTFEQKRREEREASQRREVEMKATLEAKAKEKLEEVSLVAPKLQYQEFTWEEIVTATSSFSEDLKIGMGAYGAVYKCNLHHTTAAVKVLHSAESSLSKQFDQELEILSKIRHPHLVLLLGACSERGALVYEYMENGSLEDRLFQVNNSQPIPWFVRFRIAWEVASALVFLHKSKPTPIIHRDLKPANILLDRNFVSKVGDVGLSTMIQVDPLLTQFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYALGMIILQLLTGQQAMALTYTVEIAMENNDDEELIQILDHKAGNWPMEETRQLAALALCCTELRAKDRPDLKDQILPALESLKKEADKARNSISAAPSQPPSHFLCPLLKDVMKEPCIAADGYTYDRSAIVEWMENNRTSPVTSSPLQNVNLLPNHTLYAAIVEWRNKNL
Length810
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.06
Grand average of hydropathy-0.456
Instability index42.56
Isoelectric point6.22
Molecular weight90679.77
Publications
PubMed=22865739
PubMed=23749190

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30121
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     142.84|      31|      31|     747|     777|       2
---------------------------------------------------------------------------
  717-  743 (41.29/26.52)	PALESLKKE....ADKARNSISAAPSQPPSH
  747-  777 (54.49/37.41)	PLLKDVMKEPCIAADGYTYDRSAIVEWMENN
  781-  809 (47.07/31.29)	PVTSSPLQNVNLLPNHTLY..AAIVEWRNKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     363.78|     118|     182|      22|     150|       3
---------------------------------------------------------------------------
   22-  150 (178.74/144.44)	KDSSDHASPSQPLTiaiaiSGSSKSKNVVKWAL..NKFG.SDKnvvfKLIHVhPKL...TSLP..TPSGNTVPISEAPEDVAATYRQNVMQETKETL.LKPFKKMCERKKVAVELQVLESNRVAMAITKEvNEHLISN
  207-  333 (185.05/121.16)	RDSGNERTDSSSWS.....SGSGPNSDVMSNALksNPHSlSNK....RLQHL.PTIirgVSVPmeTSSANSDDTRSMSSDVAEGVSKRSSPETSHSVsWNPRLRDFDDRKDAMNSLSMSSNHGYGNVTPG.GDHYFSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.80|      39|      53|     345|     383|       5
---------------------------------------------------------------------------
  345-  383 (63.13/49.10)	RAELRHAQELYAVAQVETLD..ASRKLNELKFEELKLMEHE
  399-  439 (57.67/44.14)	RREEREASQRREVEMKATLEakAKEKLEEVSLVAPKLQYQE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30121 with Med32 domain of Kingdom Viridiplantae
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