<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30114

Description Uncharacterized protein
SequenceMSSSNQMGSDGKFGRGPRELSGAVDLISRYKLLNHHSFFCKKPLPLAISDTNYLNNVVGDTEIRKGEGMELDQLFQNSYPSEKTAYIQPFDMETLGQAFQLRETAPVDLPSAEKGTPTISGRPKIKSKDKVRKHKKHKEKDRDKEEEQKKHKHRHKDRSKDKDKDKDKDKEKKKDKSGNHESGGDHSKKHEKKRKQEVTGSSASVQNHKKTQKHKNQ
Length217
PositionHead
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-1.564
Instability index31.29
Isoelectric point9.72
Molecular weight24855.61
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30114
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.91|      21|      21|     132|     152|       1
---------------------------------------------------------------------------
  128-  149 (34.17/11.07)	KDKvRKHK..KHKEKDRDKEEEQK
  150-  173 (26.74/ 7.36)	KHKhRHKDrsKDKDKDKDKDKEKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.59|      18|      21|     178|     196|       2
---------------------------------------------------------------------------
  178-  196 (28.97/18.35)	GNHESGGDHsKKHEKKRKQ
  200-  217 (31.62/15.90)	GSSASVQNH.KKTQKHKNQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30114 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AYIQPFDMETLGQAFQLRETAPVDLPSAEKGTPTISGRPKIKSKDKVRKHKKHKEKDRDKEEEQKKHKHRHKDRSKDKDKDKDKDKEKKKDKSGNHESGGDHSKKHEKKRKQEVTGSSASVQNHKKTQKHKNQ
85
217










Molecular Recognition Features






MoRF SequenceStartStop




1) EEQKKHKHRHKDRSKDKDKDKDKDKEKKKDKSGNHESGGDHSKKHEKKRKQEVT
2) KIKSKDKVRKHKKHK
146
124
199
138