<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30113

Description Uncharacterized protein
SequenceMAPPPPPPSLEYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDAIAERLYTALIALPQPEAPGLPTPGQPALLLPEGAASVPSLCSSDRAEVVTNDGGAAPRNDAVVAEAFRVKAALSNAHEKSEAELLELLQRLRQLEFTVDAIMATEIGMAVKPLRKHASKQIRQLIRSLIEGWKSTVNEWVNDGGPIVDHTPQSVDASCLDQEEGGLPSPPMDEAALFATPCTSIQLSEFFDEMDDDGNIRSDAKERTRCNPPNQEPVRKQSPMGQWYDPEQNWRLDQSAMKQSRPNEPFNWQTKHQPNPGAQGKPSNAAFGPGRPQMMRLELKGSEMRPKQEQDVSVAQRRLKPTVPKPSPRQDENSVRAKLELAKEAKLEATKRKLQEGYQEFNNAKKQRTVQMVDPQDLPKQGNRNLVLNGKARNSNNIWNRLGMRR
Length438
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.750
Instability index55.33
Isoelectric point8.24
Molecular weight48594.34
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30113
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.24|      16|      18|      67|      82|       1
---------------------------------------------------------------------------
   67-   82 (29.10/18.52)	PGLPTPGQPALLLPEG
   87-  102 (27.14/16.72)	PSLCSSDRAEVVTNDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.51|      33|     206|       5|      39|       2
---------------------------------------------------------------------------
    5-   39 (55.07/37.06)	PPPPSLEywRGFFSGARASI.....FDAI..DAAIRVAAADH
  216-  255 (51.44/27.39)	PSPPMDE..AALFATPCTSIqlsefFDEMddDGNIRSDAKER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.92|      15|      15|     269|     283|       3
---------------------------------------------------------------------------
  269-  283 (33.81/23.31)	QSPMGQWYDPEQ.NWR
  286-  301 (26.11/16.05)	QSAMKQSRPNEPfNWQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30113 with Med26 domain of Kingdom Viridiplantae
Unable to open file!