<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30107

Description Uncharacterized protein
SequenceMTSPAPPNPSPVPVPVPTPTPTANGTASPPKDQPPPPPQPQQQAGGQEELAAADGGGAEAAEAGVVAGGSGEAMEVDGGPGAGDAEAGGAAGGGGGSGAGGGAQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPNKGPVNLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPGNSTSSNLKTFEEKFLTQQPQSSGWPSILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIVTENGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEAAQTKKQTENETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPTSFGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKVNSAAWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIEPDKMTVEPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPSPSNNQGNQGGATSATGNSQMQEWVQGAIAKISNNSDGAATATPNPMSGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNQDSAIQKIHHMMNAKTEDSGTTVRSGLGAAKVEDGQATRGGQFALGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSNNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPHSKASGSISPHLSDMEEDSSNSLGIQSLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVITAVWRTGLDGEWYKCVRCLRQTCAFAQPGAPNPTNEREAWWISRWSHACPMCGGSWVKVV
Length1291
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.07
Grand average of hydropathy-0.252
Instability index52.64
Isoelectric point6.28
Molecular weight138282.31
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30107
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.71|      18|      21|      54|      71|       1
---------------------------------------------------------------------------
   47-   69 (28.48/13.14)	QEelaaaDGG.GAEAAEAGVVAGG
   70-   93 (26.23/11.52)	SGeamevDGGpGAGDAEAGGAAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     441.78|     105|     111|     821|     929|       2
---------------------------------------------------------------------------
  821-  929 (168.33/102.08)	LLP.SIQ.....GyVDAV.LDLASHFITRLR.RYASFCRTLAS....HVGPSSTTGTSRNMVTSPTNSSP...SPSNNQGNQGGAT..SATGN.SQMQEwvqGAIAKISNNSDGAATATPNP..MSGRS
  931- 1042 (146.11/77.73)	FMPiSINtgtfpG.TPAVrLIGDCHFLHRLC.QLLLFCLLFRR....RQSPRLLANAQKNQ.DSAIQKIH...HMMNAKTEDSGTTvrSGLGA.AKVED...GQATRGGQFALGAKGPEENP..I.GKS
 1103- 1205 (127.35/66.72)	VLP.EV........VEA...SLGPHMQNMPRpRGADAAGLL..lrelELQPPAEEWHRRNMFGGPW.SEPddfGPLDNMPHSKASG..SISPHlSDMEE........DSSNSLGIQSLWPRKrrLSER.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.46|      22|      30|     640|     661|       4
---------------------------------------------------------------------------
  640-  661 (42.74/23.02)	PPAFSSSSCCLAS.VWHDTLKDR
  671-  693 (34.72/17.40)	PPAILSTQTKVNSaAWERAIADR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.72|      12|      19|      13|      25|       5
---------------------------------------------------------------------------
   13-   25 (21.07/11.32)	PvPVPTPTPTANG
   35-   46 (26.65/11.09)	P.PPPQPQQQAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     362.61|      83|     110|     391|     473|       6
---------------------------------------------------------------------------
  308-  381 (107.91/56.44)	..LHW...SQW.PSQNSAQPRWFSTSKGLLGAGPSGIMAADAIVTENGAL.HVAGV....PLVN.PSTVVVWEVMPGLGNGIQATA...
  391-  473 (137.57/74.29)	PSLNP...PSW.PGFAPLAAYLFSLQDYLVSEAAQTKKQTENETTEAASI.HCCPVSNFSAYVS.PEAAAQSATTTTWGSGVTSVAFDP
  499-  585 (117.12/61.98)	PSITGwrvQCWeSSLQPVV..LHPIFGSPTSFGGQPPMQTVWSTRVNKSIpPTEDLKNPQTYVPmPTTSDERSSSECSVDRANRLSFDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.73|      57|      84|     141|     203|       8
---------------------------------------------------------------------------
  141-  203 (97.92/61.31)	WC....GKLNAIACASE.TCARIPSSN.SSPPFWipIHILNPER..PTECSVFNVKADSPRdfvqFIEWSP
  222-  286 (84.81/41.15)	WTqpnkGPVNLVRDASSwQCEHEWRQDlSVVTKW..LSGISPYRwlPGNSTSSNLKTFEEK....FLTQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.50|      10|      18|     790|     799|       9
---------------------------------------------------------------------------
  790-  799 (18.72/11.13)	INPSTLLPEP
  810-  819 (18.78/11.19)	IEPDKMTVEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.31|      16|     116|     609|     626|      12
---------------------------------------------------------------------------
  609-  626 (26.03/23.55)	VAFLRGGVHifSGPNFDQ
  726-  741 (30.27/19.44)	IAFLDADFH..SLPTMQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30107 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTSPAPPNPSPVPVPVPTPTPTANGTASPPKDQPPPPPQPQQQAGGQEELAAADGGGAEAAEAGVVAGGSGEAMEVDGGPGAGDAEAGGAAGGGGGSGAGGGAQQASPATVFRIR
2) PMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECS
3) SSTTGTSRNMVTSPTNSSPSPSNNQGNQGGATSATGNSQ
1
533
860
115
574
898










Molecular Recognition Features






MoRF SequenceStartStop




1) QEELA
2) VFRIRLKQ
47
111
51
118