<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30106

Description Uncharacterized protein
SequenceMTSPAPPNPSPVPVPVPTPTPTANGTASPPKDQPPPPPQPQQQAGGQEELAAADGGGAEAAEAGVVAGGSGEAMEVDGGPGAGDAEAGGAAGGGGGSGAGGGAQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPNKGPVNLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPGNSTSSNLKTFEEKFLTQQPQSSAGWPSILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIVTENGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEAAQTKKQTENETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPTSFGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKVNSAAWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIEPDKMTVEPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPSPSNNQGNQGGATSATGNSQMQEWVQGAIAKISNNSDGAATATPNPMSGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNQDSAIQKIHHMMNAKTEDSGTTVRSGLGAAKVEDGQATRGGQFALGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSNNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPHSKASGSISPHLSDMEEDSSNSLGIQSLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVITAVWRTGLDGEWYKCVRCLRQTCAFAQPGAPNPTNEREAWWISRWSHACPMCGGSWVKVV
Length1292
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.07
Grand average of hydropathy-0.251
Instability index52.61
Isoelectric point6.28
Molecular weight138353.39
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30106
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.71|      18|      21|      54|      71|       1
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   47-   69 (28.48/11.49)	QEelaaaDGG.GAEAAEAGVVAGG
   70-   93 (26.23/10.06)	SGeamevDGGpGAGDAEAGGAAGG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.24|      18|      19|     860|     878|       2
---------------------------------------------------------------------------
  860-  878 (28.22/17.80)	PSSTTGtSRNMVTSPTNSS
  881-  898 (33.02/16.85)	PSNNQG.NQGGATSATGNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.65|      22|     110|     917|     962|       3
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  380-  401 (43.16/11.73)	ATAKINA....TSSVPPSLNPPSWPG
  919-  944 (37.49/44.94)	ATATPNPmsgrSSFMPISINTGTFPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.72|      12|      19|      13|      25|       4
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   13-   25 (21.07/11.04)	PvPVPTPTPTANG
   35-   46 (26.65/10.81)	P.PPPQPQQQAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     111|     839|     851|       5
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  839-  851 (26.05/19.19)	HFITRLRRYASFC
  955-  967 (26.85/20.00)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     212.31|      57|     111|     418|     474|       6
---------------------------------------------------------------------------
  418-  474 (95.17/50.63)	SEAAQTKKQTENETTEAASI.HCCPVSNFSAYVS.PEAAAQSATTTT.....WGSGVTSVAFDP
  490-  521 (27.33/ 9.09)	...............................YMS.PYDPDEGPSITGwrvqcWESSLQPVVLHP
  528-  586 (89.81/47.35)	SFGGQPPMQTVWSTRVNKSIpPTEDLKNPQTYVPmPTTSDERSSSEC.....SVDRANRLSFDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.20|      19|      19|     330|     348|       8
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  330-  348 (32.52/18.03)	GLLG.AGPSGIMAADAIVTE
  350-  369 (29.69/15.74)	GALHvAGVPLVNPSTVVVWE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     261.97|      86|     535|     619|     711|       9
---------------------------------------------------------------------------
  619-  708 (149.51/102.98)	IFSGP.....NFDQVDSYHVNVGSAIAPPAFS.....SSSC.CLASVWHDTLkDRTILKIIRVLPPAILSTQTKVNSAAWERaiaDRFW...WSL...LAGVDWWDA
 1150- 1197 (30.66/ 7.59)	MFGGPwsepdDFGPLDNMPHSKASGSISPHLSdmeedSSNSlGIQSLW...........................................................
 1232- 1291 (81.80/47.31)	...........................................ITAVWRTGL.DGEWYKCVRCLRQTCAFAQPGAPNPTNER...EAWWisrWSHacpMCGGSWVKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     208.07|      66|      84|     141|     212|      10
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  141-  212 (113.82/66.37)	WC....GKLNAIACASE.TCARIPSSN.SSPPFWipIHILNPER..PTECSVFNVKADSPRdfvqFIEWSPRSC...PRALLV
  222-  298 (94.26/44.09)	WTqpnkGPVNLVRDASSwQCEHEWRQDlSVVTKW..LSGISPYRwlPGNSTSSNLKTFEEK....FLTQQPQSSagwPSILCV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30106 with Med16 domain of Kingdom Viridiplantae
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