<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30105

Description Uncharacterized protein
SequenceMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSIDVLELLLPIVLGLVDTITLSQTYVRMFVELLVRRLSDTSVVDSPKRPSVSSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYGRGALLKITGGGGIASSKRCDAYRYLSCGYAVCSIQKRASDLATVANPNLQVRGAAKVVQALDKALVTGNLSVAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPCQNVKFTGRRDLSQVHVAVSILKNKMDEMNNLSRSKSSNRITMNNIVKGSSLNDACLPVAAGDDSSGLRNNTNNLDEKKDTSGIFESPGPLHDIIVCWLDQHEVSSAAGFTRVDVLIVELIRNGIFYPQAYVRQLIISGITDKNDIMLDVERKRRHHRTLKQLPGSSLFDILEETRTAEEQQLYEIMSTYSSERRLVLSELSCGPSFYASSRGEYASSSCIRKQNDLPVASGGDKHGRVPEQVEDVKALVSSLLSFTYPHPVETEPCQIKTSFQESATSTLSQVETGEAKSGCEDCMRSKGQKLDDGATPFQGFPLIQSDEEDIWWVRKGTKLHESFNVEPAQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGASTSHVCESKLSCPHHKPNMDGDNVKDFDHMRMTNLTEVGKSLKRLRLLERRSVSLWLLKSIRQLVEGSEMTASKATNSISTLSLQPDDKSASKWRLGDEELLSVLYVLDTCCDLVSGARFLVWLLAKIRGGLGSSGQPGRSSMHMRNREHQVCQVSEALVFSSLLRYENILLATDILPDVLSASVNRNSVSATARHPGSAAFAYVRYFLKKYRDVASVARWEKNFRTTCDQRLLAELDNGRSIDGDFVSSSGVSAGEEIDEQVRQKLNGRSSRLMQNMKEIVQRQADEVQRSLKEKKVLPAPKSPPSFEKEDSYQISHDIVFGLVECIRQNGGANPDGDLSIVASAVSAVVVNAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRIHINSLCLLKDTLGDRFSRVFEIALAAEASAAVTAAFAPAKMQRNQFQPSPETHDAYGNHTSDLSNSGKGFVGRTAKVAAAVSALVVGAVVHGAVSLERMVAALKIKDGLDILQLLRGLKTSTNGVSRAAGTFRMENSTEVSAHWFRILLGNCRTVYDGLIADILGESYILALSRLQQTLPLSLIFPPAYSIFAMVLWRRYIFNREDPQLYQSLSNAINDITRHQPFREICFRNTHQLYNLLASDVGDSEFAAMLESHSPDRNSKILPFVPLRARLFLDALVDCNTPMTTQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPNAEGFALSDSEKGFTEVILSRLLARPDAAPLYSEVVHLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLSTKAQVWKPWGWSSLLSDVIASKTAKRKLEVTSIEEGEVVDDTVDAKRPVKTPSHSVDRSFEGIRSINKYLTEKALAELVLPCIDRSSADIRGILSGDLIKQMGTISDHIKAVTRNGAKQAGSVPSGNEMPSSKSSGRKGIRGGSPNIGRRAPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADRSMRHTLASAILGLLATRMIYEDADLPLPPTNAIALRREVDSLLEPPLDVLLDRPGESLFERLLCVLHALLGSCKPSWLKSRPASKSTIRTQRDFSAFDNEAAEGLQSALDHMELPETIRRRIQAAMPILPPCRHPSIQCQPPQLSLAALTPLQSCILGAGPQQKSSSVSWVPTNVSSRSKAVLPSHDPEMEVDPWTLLEDGTSCPSTSSGSNGPSGVTGDLANLKACSWLKGAVRVRRTELTYIGSLDDDS
Length1894
PositionKinase
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.191
Instability index48.19
Isoelectric point7.89
Molecular weight208472.77
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30105
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.44|      49|      50|     676|     725|       1
---------------------------------------------------------------------------
  611-  679 (51.25/23.01)	RKTQS.LAQLAAAR..IEGSQgAST...SHVCESkLSCPHHKPNmDgdnvkdfdhmrmtnltevgKSLKRLRLLE
  680-  728 (80.00/39.71)	RRSVS.LWLLKSIRQLVEGSE.MTA...SKATNS.ISTLSLQPD.D...................KSASKWRLGD
  729-  776 (55.19/25.30)	EELLSvLYVLDTCCDLVSGAR.FLVwllAKIRGG.LGS.SGQP..G...................RSSMHMR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.99|      48|     222|     782|     833|       2
---------------------------------------------------------------------------
  782-  833 (71.30/56.92)	VCQVSEALVF...sslLRYENILLATDILPDVLSaSVNRNSVSATARHPGSAAFA
 1002- 1055 (72.69/46.15)	VNSVSNSLNFvrhtlrIHINSLCLLKDTLGDRFS.RVFEIALAAEASAAVTAAFA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      90.82|      17|      47|    1536|    1552|       3
---------------------------------------------------------------------------
 1512- 1525 (16.44/ 6.04)	...VDRSFEGIRS.INKY
 1536- 1552 (30.06/17.62)	LPCIDRSSADIRG.ILSG
 1565- 1582 (20.19/ 9.23)	IKAVTRNGAKQAGsVPSG
 1585- 1599 (24.14/12.59)	MPS.SKSSGR.KG.IRGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.86|      33|      49|      29|      61|       4
---------------------------------------------------------------------------
   29-   61 (54.99/33.48)	ERDSID..VLELLLPIVLGLVDT.ITLSQTYVRMFV
   78-  113 (47.87/28.17)	KRPSVSsvIAELLRYMVLAVPDTfVSLDCFPLPSFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.29|      30|      50|    1774|    1804|       6
---------------------------------------------------------------------------
 1774- 1804 (54.19/35.78)	PCRHPSIQCQPPQLsLAALTPLQSCILGA.GP
 1827- 1857 (54.11/31.33)	PSHDPEMEVDPWTL.LEDGTSCPSTSSGSnGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.27|      14|      17|    1381|    1394|       7
---------------------------------------------------------------------------
 1381- 1394 (22.89/14.48)	FALSDSEKGFTEVI
 1399- 1412 (23.38/14.97)	LARPDAAPLYSEVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.97|      22|      27|    1215|    1237|       8
---------------------------------------------------------------------------
 1215- 1237 (37.31/29.27)	WRRYIFnREDPQLYQSLSNAIND
 1244- 1265 (40.65/26.74)	FREICF.RNTHQLYNLLASDVGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.22|      39|      53|    1613|    1657|       9
---------------------------------------------------------------------------
 1613- 1657 (58.58/48.36)	PSPPSasalrAALWLRLQfIIRLL..PV.IMADR...SMRHTLASAILGLL
 1669- 1713 (52.64/29.49)	PLPPT.....NAIALRRE.VDSLLepPLdVLLDRpgeSLFERLLCVLHALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.82|      15|      19|     441|     456|      10
---------------------------------------------------------------------------
  441-  456 (22.49/20.94)	STYSSERRLVLSElSC
  459-  473 (28.32/20.84)	SFYASSRGEYASS.SC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.53|      17|      19|     167|     184|      11
---------------------------------------------------------------------------
  167-  184 (21.97/19.54)	NLQVrGAAKVVQALDKAL
  188-  204 (27.56/18.86)	NLSV.AYSSLFNDLSDAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.71|      44|     301|     212|     261|      12
---------------------------------------------------------------------------
  212-  261 (75.16/79.18)	EVSPC.LQSSLMWIGTVELSLICSifflCEWAT.CDyrDCRASPCQNV.....KFTG
  516-  566 (64.55/49.01)	ETEPCqIKTSFQESATSTLSQVET....GEAKSgCE..DCMRSKGQKLddgatPFQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.35|      11|      19|     369|     379|      14
---------------------------------------------------------------------------
  369-  379 (18.87/12.94)	LIVELI..RNGIF
  388-  400 (14.48/ 8.08)	LIISGItdKNDIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.70|      14|      23|     950|     963|      17
---------------------------------------------------------------------------
  950-  963 (25.49/16.39)	IVFGLVECIRQNGG
  972-  985 (21.21/12.42)	IVASAVSAVVVNAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30105 with Med12 domain of Kingdom Viridiplantae
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