<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30102

Description Uncharacterized protein
SequenceMMQSHLPSPARLGLTASSPSLPPNPSPLNPTSSPPQGNLPASATAGTGAAPTLTTSPSLLPLLPPLPRAQSLLQLISSLASNLFELSPNRAAWISAYRGSLPTFLPSASSSPPPPLPTPISSTKDALSLLTTLQTQLFEAVAELQETLDLQDARVRLAREARAKDAALLAFAKKLHEAHHVLDRLVDDYADYRRDPKRPRGAAAADDPEPVSDGDFGASLHSRIKLEDILIYAHHISYTTFAPPEHGAGLPLRGALPPAPQESEMRSSKLYQFADMDVGVPKKPLEAKEGITVEVEAMPLYEPPPQEGAPRLPDTLPPMFPKDLKPPPGWKPGDPITLPLDDILPGVKGEEPKAPVPQAPVSVRPMVPMGPAPIQVAAVQLDFGSSSSDEYSSDVGSSEEDDED
Length404
PositionMiddle
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.338
Instability index62.32
Isoelectric point4.90
Molecular weight42952.16
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30102
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.81|      41|      42|     288|     329|       1
---------------------------------------------------------------------------
    8-   45 (51.73/15.70)	SP.aRLG..LTASSPSLP...P.N......P...SPLNPTSSPPQgnLPASATA
  288-  326 (66.23/22.09)	....KEG..ITVEVEAMPLYEP.P......PQEGAPRLPDTLPPM..FPKDLKP
  327-  371 (45.85/14.36)	PPgwKPGdpIT.....LPLDDIlPgvkgeePKAPVPQAPVSVRPM..VP..MGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.75|      19|      52|      48|      85|       2
---------------------------------------------------------------------------
   48-   67 (33.88/ 7.73)	GAAPTLTTSPSLLPlLPPLP
   99-  117 (38.88/22.57)	GSLPTFLPSASSSP.PPPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.19|      29|      38|     124|     154|       4
---------------------------------------------------------------------------
  124-  154 (38.40/33.02)	KDAlSLLtTLQTQLFEAVAELQETL.DLQDAR
  164-  193 (45.78/29.41)	KDA.ALL.AFAKKLHEAHHVLDRLVdDYADYR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30102 with Med4 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ITVEVEAMPLYEPPPQEGAPRLPDTLPPMFPKDLKPPPGWKPGDPITLPLDDILPGVKGEEPKAPVPQAPVSVRPMVPMGPAPIQVAAVQLDFGSSSSDEYSSDVGSSEEDDED
2) MMQSHLPSPARLGLTASSPSLPPNPSPLNPTSSPPQGNLPASATAGTGAAPTLTTSPSLLP
291
1
404
61










Molecular Recognition Features






MoRF SequenceStartStop




1) YSSDVG
391
396