<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30101

Description Uncharacterized protein
SequenceMAPPSRDYWLGFFRGAGDSIFDAIDAAITVAASDHPGALRERRDGIAERLFTALLVTGATAAAGAAAVAAAAAGTPVAGAPTPAQLHPEGAASVPSLCSSDRAEAITDDGAPRCDDPVLAETERIKAILLNDQEKSEAELLELLRRLQELDLAFDTLDVTAIGKAVANFRKHSSKQIRNLVRSLIEGWKHTVDVWIARRREAVVDQTPQSMGPSSLEQEDRGVASTPMDERDLFATLSTTIRLSEENQGSKFSDGMDDDGSVMNNSGRDCGQQYPINQEPARRPPSMGQLYDPEPYWRQEQPAMKQSRPQELSNGQKKEQFVAEMLARPSNAELGPGRPQARPRQHQESSPAQGRPQSASSEKPPAHHDTNSVRAKLELAKNAKLEATKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQGNNRNFQPSGKPRNNSNINSNRNWSR
Length445
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.792
Instability index52.58
Isoelectric point6.24
Molecular weight48766.65
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30101
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     221.16|      73|     131|      18|      95|       1
---------------------------------------------------------------------------
   18-   95 (107.46/64.79)	DSIFDAID.AAITVAASDhpgaLRERRDGIAERLFTAlLVTGATAAAG...AAAVAAAAAGTPVAGAPTPAQLHPEGAASVP
  151-  227 (113.71/56.94)	DLAFDTLDvTAIGKAVAN....FRKHSSKQIRNLVRS.LIEGWKHTVDvwiARRREAVVDQTPQSMGPSSLEQEDRGVASTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.99|      16|      19|     294|     312|       3
---------------------------------------------------------------------------
  294-  312 (25.12/23.14)	EpywRQEQ.PAMKQSRPQ..EL
  316-  334 (16.87/ 6.10)	Q...KKEQfVAEMLARPSnaEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.78|      10|      19|      97|     106|       4
---------------------------------------------------------------------------
   97-  106 (17.19/10.03)	LCSSDRAEAI
  119-  128 (15.60/ 8.54)	LAETERIKAI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30101 with Med26 domain of Kingdom Viridiplantae
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