<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30100

Description Uncharacterized protein
SequenceMDAAAAALGAASGPGAPPPGAAAGEQQAAPRVERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDVIARTNPAASPKWQDVLGQFSMVSMELFNIVEDIKNVSKVFVVYPRNVNAENAPILPVMLSSKLLPEMEVEEATKREQLLSGITNLPVPTQIEKIKVRIDMIGSACETAEKVIADCRKSYGLGTRQGTNLVPTLDKAQAAKIQEQENLLRAAVNYGEGLRVPGDQRQPQSLPSHLVEVLSFGDGQQSFGDNSGGYPKNSSTFTPSGVNTQGNPVQASGGQLLGRPAPSPGGTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLIQASQQQQLHAQQQLRPSAAGMLAQSTLPQLQDLQGQAQQKLQVPGQQQMQYNQALSQQFHNRQMQPGRMQPGMAQSQLNQGTQLRSHLGQFAGPANSAMFTAAQASSNSQMMANMPGTMQSQSLMPQMQYGMAGGHPQRSHPSQMLTDQMFGMGATNSNMMGMQQQQQQQQQQGVYGNMQAGAQNMQQGMVGLQNQGQNPNFPQQRQQNQQ
Length555
PositionHead
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.04
Grand average of hydropathy-0.626
Instability index54.75
Isoelectric point9.13
Molecular weight59872.77
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30100
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     250.16|      41|      41|     318|     358|       1
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  318-  358 (72.55/20.73)	PRSGTNMM.NTPSPQ.QHLTPQQQRQKLIQASQQQQLHAQQQL
  360-  399 (47.03/10.85)	P.SAAGMLaQSTLPQlQDLQGQAQ.QKL.QVPGQQQMQYNQAL
  449-  490 (52.42/12.94)	ASSNSQMMaNMPGTM.QSQSLMPQMQYGMAGGHPQRSHPSQML
  498-  523 (41.39/ 8.66)	GATNSNMM............GMQQQQQ.....QQQQQGVYGNM
  524-  554 (36.78/ 6.88)	QAGAQNMQ.QGMVGL.QN...QGQNPNFPQQRQQNQ.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.29|      54|     208|      13|      91|       2
---------------------------------------------------------------------------
   16-   36 ( 3.83/ 8.69)	........................................APPPGAAageqqAAPRVERLS
   48-   86 (49.38/26.19)	MRARAVGLYKAISRILEDFDVIARTNPAASPKWQdVLGQ......................
  254-  308 (92.08/31.63)	SFGDNSGGYPKNSSTFTPSGVNTQGNPVQASGGQ.LLGRpAPSPGGT.....GTPNFENVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.44|      24|     208|     212|     235|       4
---------------------------------------------------------------------------
  187-  221 (24.59/10.35)	YGLGTRqgtnlVPTlDKAQAakiqeQENLLRAAVN
  222-  247 (38.85/20.46)	YGEGLR.....VPG.DQRQP...qsLPSHLVEVLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30100 with Med8 domain of Kingdom Viridiplantae
Unable to open file!