<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30099

Description Uncharacterized protein
SequenceMAVASARSSPHSDSSPLPPVSPQPVAERLFMRGGSGRSPGSSSSSSSSRSPSLREIDEEAAVVINDGGEKLYVAVGKDFKDGKSSLSAAQSLGLLGGGLSLVLLHVHQPADRIMSGLCKVPASQLEEKELKAYRKIEREEMNTLLNQYMTYCRLYLKVQAETLVIEKNNVPNGIVELINQHCITKLVMGMSSFSTKRKVPKSKVAAIVHQQAKPYCQISFICKGSLAWTRDANLDSIKADSPRSSSASTLSDEPELPARSVSLPPGHPGYMGSPDQQFLPRRSNSVSYPSPGFIANNVERMLHIAQHSIHVKPRNCSPNSSLPSNEGSSSSSLKDSDSMDGSPLPASVVSSEEQQMSMVETSMQNEVFEQLQQVRNELEHSRKEASEGRQKAERDLFEASRMFKARENSLLKEKREVDERLNKEKAFLEKENFQIFNELQKANEQRADLENKLLQTNSLLEQLQQLQGELQREKEDALREAEEMRKLYGNSDFISAGEVSLTEFSYSEIQEATKNFDESMEIGHGGCASVYKGFLRHTTVAIKKFNREGIVGEREFNDEVEILGRMRHPNLVTLIGVCRDPKVLVYEFLPNGSLEDRLQCKHHTEPLPWRMRIRIAADICTALIFLHSNKPKSIAHGDLKPDNVLLDTNFVGKLGDFGISRSLNLTNTTVTPYHRTDQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLQSEAEAALSSGVLHEILDTSAGDWPPEFAEELASLALKCCKYERKERPDLAKEAWGILQAMMNEPTPSSSLPLEAPSYFICPMTQEIMRDPHIAADGFTYEGEAIKDWIQRGHRMSPMTYLNFPHHQLIPNNALRFAIQEWQTKQQQ
Length868
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.496
Instability index47.73
Isoelectric point5.98
Molecular weight96730.41
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30099
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.23|      16|      28|       1|      22|       1
---------------------------------------------------------------------------
    1-   17 (25.82/10.68)	MAVASARsSPHSDSSPL
   31-   46 (30.41/16.79)	MRGGSGR.SPGSSSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.73|      29|      30|     412|     441|       2
---------------------------------------------------------------------------
  364-  391 (38.13/25.56)	.QN.EVFEQLQQVRNELEHSRKEASEGRQK
  413-  441 (45.05/33.53)	EKR.EVDERLNKEKAFLEKENFQIFNELQK
  444-  472 (37.54/21.46)	EQRaDLENKLLQTNSLLEQLQ.QLQGELQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.05|      11|      31|     280|     290|       3
---------------------------------------------------------------------------
  280-  290 (23.21/14.63)	PRR.SNSVSYPS
  313-  324 (17.85/ 9.20)	PRNcSPNSSLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.44|      26|      28|     512|     537|       4
---------------------------------------------------------------------------
  512-  537 (47.14/29.14)	ATKNFDESMEIGHGGCASVYK..GFLRH
  541-  568 (40.29/23.95)	AIKKFNREGIVGEREFNDEVEilGRMRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.27|      12|      21|     268|     279|       5
---------------------------------------------------------------------------
  268-  279 (24.32/15.78)	PGYMGSPDQQFL
  291-  302 (21.95/13.53)	PGFIANNVERML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.70|      15|      27|     167|     181|       6
---------------------------------------------------------------------------
  167-  181 (25.77/16.39)	KNNVPNG.IVELINQH
  196-  211 (19.93/11.14)	KRKVPKSkVAAIVHQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30099 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IAQHSIHVKPRNCSPNSSLPSNEGSSSSSLKDSDSMDGSPLPASVVSSEEQQMSMVETSMQNEVFEQLQQVRNELEHSRKEASEGRQKAERDLFEA
2) IKADSPRSSSASTLSDEPELPARSVSLPPGHPGYMGSPDQQFLPRRSNSV
3) MAVASARSSPHSDSSPLPPVSPQPVAERLFMRGGSGRSPGSSSSSSSSRSPSLREIDEE
304
237
1
399
286
59










Molecular Recognition Features






MoRF SequenceStartStop




1) LPPVSPQPVAERLFMRG
17
33