<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30098

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWSTIVGDYVEKIVRSFCANEVPGQKLAGAPPELALVVFHTHGPYSAFGVQRSGWTKDIDSFLSWLSGIPFSGGGFSEASTCEGLAEALMILQGTPNTTQSHPNHEAQKHCVLVAASNPYPLPTPVYCLPTQSTDHKENTESSKEPSIADAETVAKSFAQCSVSLSVISPKQLPTLKAIYNAGKRNPRAADPSVDHAKNPHFLVLLSENFMEARTALSRPLHGNLAPNQTVTKMDTTPSVTMAGPTSNANPSVNGPMMGRQPVGVGGISTATVKVEPATVPPMVSAPAFSHVTPISNVSSQGISALQTSSPSLISQEANFANDNVQEHKPIIHPVQQPVRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNIGATPIQVHMSNMISSGMTSTPSVISSMSAPGQPISTQQMVQSTAIGSFGSNTSTVSGNSNIAVSSSLPSIQSSMGMGQSAQPVAQGGLMAGSQLGQGGIGANQNVSVLGPTAISSAPAMMPTPGMAQPTGVNSLGVTNNSAMNMPIGQHPNAQQLPPKYVRIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADLLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSMSDKAGRLIGMLFPGDMVVFKPQVPTQQPPMQQQQLQQQQQLQQQQLQQQHMHMQPQGLPLQQQPSQMQPMQQQQQPQMQTMQHQQQPQMQTMQHQQQQQPQQMQPMQHQQQQMQHQQQQMQPMQHQQQQMQPMQHQQQQQQQQMPLQQQQQQMQQHQQQQMQQMQQQQHQQQQMQQMQPQQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKMAPQGPGSMPGGGFLP
Length881
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.04
Grand average of hydropathy-0.505
Instability index54.79
Isoelectric point8.39
Molecular weight95295.08
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30098
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     275.07|      27|      29|     757|     785|       1
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  704-  729 (47.74/ 9.46)	HM...hMQP...QGLPLQQQPS.QMQPMQQQQQ
  731-  751 (38.28/ 6.16)	QMQ..tMQ...H.......QQQpQMQTMQHQQQ
  752-  782 (55.49/15.46)	Q.QpqqMQPmqHQQQQMQHQQQ.QMQPMQHQQQ
  783-  805 (44.97/ 8.49)	QMQ.pmQ....HQQQQ...QQQ.QM.PLQQQQQ
  806-  826 (44.29/ 8.25)	QMQ.......qHQQQQMQQMQQ.Q....QHQQQ
  827-  850 (44.30/ 8.26)	QMQ..qMQP...QQQQ...QQP.QMVGTGMGQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     303.11|      45|      45|     415|     459|       2
---------------------------------------------------------------------------
  259-  296 (37.70/11.57)	.T..PSV..TM.AGPtsnA....NP.........SVNGPMMGRQPVGVG..GIS..TATVK.......
  298-  344 (42.39/14.11)	.E..PATVPPMvSAP...AfshvTP.........ISN...VSSQGISAL.qTSS..PSLISQEANFAN
  349-  398 (51.09/18.82)	EH..KPIIHPV.QQP...V....RPgghgsllnnLSQVRLMNSTSLG....GGA..TS.M.GLPNIGA
  415-  459 (81.18/35.08)	ST..PSVISSM.SAP...G....QP.........ISTQQMVQSTAIGSF..GSN..TSTVSGNSNIAV
  462-  501 (48.57/17.45)	SL..PSIQSSM.GM....G....Q...........SAQPVAQ....GGLmaGSQlgQGGIGANQN..V
  502-  536 (42.18/14.00)	SVlgPTAIS...SAP...A.....M.........MPTPGMAQPTGVNSL..G.......VTNNS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.10|      41|      64|     542|     584|       3
---------------------------------------------------------------------------
  542-  571 (50.21/21.22)	.............................IG............Q.HPNAQQLPPKYVRIWEGTLS.....GQRQGQP
  574-  638 (47.20/22.20)	ICKLEGYRSGTasetlaadwpetmqivrlIA............QeHMNNKQYVGKADLLVFRTLNqhgflGQLQEKK
  639-  696 (39.69/12.66)	LCAVIQLPSQT......lllsmsdkagrlIGmlfpgdmvvfkpQ.VP.TQQ.PP....MQQQQLQ.....QQQQLQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.29|      41|      49|     141|     188|       4
---------------------------------------------------------------------------
  141-  188 (61.78/44.59)	PYPLPT..PVYclptqsTDHKENTESSkEPSIADAET......VAKSFAQCSVSLS
  192-  240 (60.51/29.32)	PKQLPTlkAIY......NAGKRNPRAA.DPSVDHAKNphflvlLSENFMEARTALS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30098 with Med25 domain of Kingdom Viridiplantae
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