<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30097

Description Uncharacterized protein
SequenceMASNMQPSGPPQPPRPPMMGSNAQPQNLGPPMPMQFRPVVPSQQPPQFMPPPAQQFRPVGQPMPGANIGMPGQMPHFPQPGQHLSHSSQVPPASQGVPMAYQPARPMSSAPMQPQQQAVYPGGHMPTMGAPMQPPSYTYQPTSIPPVVQPWGQSVPHVTPLVQPGHQPVPATATLPSVNSSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKAARELAEKASNQQSDRETGTAAALVGSAASEPSTVPANQSSTAVGLIAPSTHDASANPVPPGPVPSHNVDNTSSSSTIGMQNGGTSTAVVPVPTSTEVKLVATDAGTSRNNNESSSVTTGADIEDGTSAEDLEEAKKTMPVAGKINVTPLEEKTSEEEPVVYATKTEAKNAFKSLLESVNVESDWTWEQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEECKELTSSTRWSKAILMFDDDERFKAVERPREREDLFEGYLVELHKKEKAKAIEEHRRHVAEYKAFLESCDFIKATTQWRKVQERLEDDERCSRLEKIDRLNVFQDYIRYLEKEEEEQKRIQKEHVRRQERKNRDGFRKMLEEHVNDGTLTAKTRWRDYCSQIKESQAYLAVASNTSGSTPKELFDDVIEELDKQYLDDKTCIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQIERLREKEQKDAKKRQRLGENFSDLLYSITEISAASTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKDREEKEKKKEKERKEKERKEKDREKEREKEKGKDRSRRDETDIDGADVENHGSKDKKRDKQKKHKRRHHDTDDASSERDDKDDAKKSRRHTSDRKKSRKHTHASDSDSENRHKRHRKDRDSSRRNGAHELEDGELGEDGEVH
Length983
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-1.169
Instability index57.86
Isoelectric point6.36
Molecular weight112196.63
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30097
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     169.48|      29|      33|       1|      33|       1
---------------------------------------------------------------------------
    5-   33 (64.05/31.92)	MQPSG........PP.........QPPRP...PMMGSN.AQPQNL....GPPMP
   53-   78 (28.08/ 7.74)	..............A.........QQFRPvgqPMPGANiGMPGQM.....PHFP
   79-  126 (30.41/ 9.01)	.QPGQhlshssqvPPasqgvpmayQPAR....PMSSAP.MQPQQQavypGGHMP
  148-  176 (46.94/15.82)	VQPWG........QS.........VPHVT...PLVQPG.HQPVPA....TATLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     188.25|      39|      39|     188|     226|       2
---------------------------------------------------------------------------
  188-  226 (72.90/44.30)	WQEHTAAE..GKKYYYNKKTRQSSWEKPVELMTPLERAD.AS
  229-  268 (64.48/38.31)	WKEFTTPE..GRKYYFNKVTKQSKWTIPDELKAARELAEkAS
  274-  313 (50.87/28.63)	RETGTAAAlvGSAASEPSTVPANQSSTAVGLIAP.STHD.AS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     252.78|      28|      28|     822|     849|       3
---------------------------------------------------------------------------
  524-  554 (26.86/ 8.76)	.ER.FKAVERPREREDLFEgylvEL..............HKKE...KAKA
  555-  579 (30.56/10.88)	IE....EHRRHVAEYKAFL....ES..............CDFI...KATT
  580-  621 (26.22/ 8.39)	QWR..KVQERLEDDERCSR...lEKidrlnvfqdyirylEKEE...EEQK
  822-  849 (47.13/20.37)	KER.LKEKERLREEEKAKR....EK..............DREE...KEKK
  852-  873 (36.39/14.22)	KER..KEKER...KEK.DR....EK..............ERE....KEKG
  874-  898 (22.21/ 6.10)	KDR.S......RRDETDID....GA..............DVENhgsKDKK
  901-  927 (38.53/15.44)	KQK..KHKRRHHDTDDASS....ER..............DDKD...DAKK
  928-  955 (24.89/ 7.63)	SRRhTSDRKKSRKHTHAS.....DS..............DSEN...RHKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.00|      16|      17|     361|     376|       4
---------------------------------------------------------------------------
  365-  384 (21.95/10.92)	TSRNNNESSSVT.TGAdiedG
  385-  401 (17.05/ 6.80)	TSAEDLEEAKKTmPVA....G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.76|      25|      26|     648|     672|       6
---------------------------------------------------------------------------
  648-  672 (42.36/25.56)	NDGTLTAKTRW..RDYCSQIKESQAYL
  677-  699 (32.96/18.26)	NTSGSTPKELF..DDVIEEL..DKQYL
  710-  734 (25.44/12.43)	KSGKIPMTTSWtlEEFQTAILEDDA..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.43|      31|      66|     410|     449|       7
---------------------------------------------------------------------------
  410-  437 (31.10/15.75)	.............EKTSEEEPVvYATKT..EAKNAFKSLLESV
  438-  475 (20.21/22.42)	NvesdwtweQTMrVIINDKRY..GALKTlgERKQAFNEYL...
  476-  504 (45.12/23.35)	N........QRK.KFEAEEKRI.KQRK....ARDDFLAMLEEC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30097 with Med35 domain of Kingdom Viridiplantae
Unable to open file!