<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30096

Description Uncharacterized protein
SequenceMAAVKASEARGDPPLLRAVELARVVAGEGAGIPSADLAGILVSNLCFAHNSPSLWKLVGQAMASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELVKCNITSSSLSMEAGPNRDKITKSISDALQLSKIYGFSGTEFGHVVIMFVLAVTTKLIDSILEDCGFPSGMEEGQESVYAIEGPQPMDLDVKRVSTENQNEHREQLRRKNTAMALDVLHMMVADRKIQSFLRLIFLNMPEKFSSLSQRLSSIEAHKVALERLLPSGHKINDLLLDIRRVCNANYQPNNKRIVDVLGNMRSGGSLLGQLTGAGRAACWIIFDIYVENAIDGKHLSGISAIEVLKEMTKTLQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVDAILKEESDIFGAEGSKILPRRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYTAGVVNSSMVAQTDSSTKVSMKAVGNMLHLIIEACISRKLIDTSAYLWPGYVVSSAPLKDTTLPQESPWLNFIKGAPLSDPLIDALVATPASSVGELEKLYNIAANGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSSISTTGSMNHYLAQMSTLNEILLGVSYGDAIHILSLYGMVPDVAAALMPLCEAFGSIAPPPNHKSTILGETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMRNNRIDLSNSSAPSRDSYNNMSSVNEVPAQPVYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKGGVPSGNLSSTSSSSVSGSSVNASDDSFQRLAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEIKEILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDRSLDCIQGVIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCLRSPFGRDKDAVAQLIQSCFSSFLLSSSGGSDITANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWSHKLANGWSFNGPPQLKSGRTPLSCAASMAHQVAMLGGGLLCIAGGPLVVQVLYEETLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFFCGSLLWGADRISPVMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCNPGTWKAYVSRFVFLVVKFVPSWLRDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISAVVETLL
Length1307
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.07
Grand average of hydropathy0.169
Instability index47.89
Isoelectric point8.31
Molecular weight141658.77
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30096
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     304.67|      83|      84|    1056|    1139|       1
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  978- 1031 (62.41/31.86)	..........................I...GQALENcaGGSSWPSMPiiGALWTQKVRRWHD..FIVLSCLRSPF........GRDKDAVAQL
 1033- 1118 (132.53/80.33)	QSCFSSFLLSSSGGSDItANRGvGALL...GDSITN..QGLRLPMAP..GFIYLRTCRTFHDTYFVSEVILKQVIeWSHKLANGWSFNGPPQL
 1119- 1195 (109.73/61.99)	KSGRTPLSCAASMAHQV.AMLG.GGLLciaGGPLVV..QVLYEETLP..TLLLSAREQSLKDPGPVSSTL......QGYAMANMLFFCG....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.77|      29|     510|     277|     305|       5
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  277-  305 (53.14/35.43)	CNAN..YQPNNKRIVDVLGNMRSGGSLLGQL
  788-  818 (49.63/32.57)	CNKNpvHQVANKILSMICRKMNKGGVPSGNL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30096 with Med33 domain of Kingdom Viridiplantae
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