<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30095

Description Uncharacterized protein
SequenceMAMSAPPPAPSPSSSSSAWLEWAAEYTKAAQAESRPPPEWAARVAAAAAAGAAGESTDVPWSAGLAEVLAQPLLSGVGGGGGAPAAAAAWKYAEAALASRLASPALLLALLSTRVIPHRFSRPMEYRLYLELLKRHGFNFHYQMKAANFRKIMDLIDGNLSLSKIFGVSTCHPGVFVVHFVLCILWQLVDVVLDDEGLLELTPEKKAQWPTRPEDMSTFEGTFTEQRTEKIEKLQKMNTLTTVELIEHLLRDKVITRILSLARENMHSHWGTFTSRLHLLATNSSTLQNSAISLEPFQQLILGDCNVYGEIKHNMRKRFHPILASNPLSSPNGRCLGASYSAQWIPIDLYLEDCLDGSIAATNSIEILSGLVKALQSVNRSTWHDAFLALWVASLRLVQREREPIEGPVPHLDTRLCMLLSITTLVVADIIGEADSLCNEKELNSHAKEKKSIGNLRDELMLSLQILGDYESLLAPPPCVIQAANHAATKAAMFISGISINNGYIENVNGMNYAGNMRHLIVESCISRNLLDTSAYYWPGYISNHVNSVSHTLPSQLAGWSSFMKGAPLTQSLVNMLASTPAPSLAEVEKLFEVAVNGSDDDNVSAASVLCGATLLRGWNFQEHTVRLVVKLLSPSDPNDYSGRESQLIKLGPMLNVILSGISAVDYAPIFSFHGLIPELAAALMAICEVFGCLSPSVSWTLRTGEEISAHTVFSTAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVLSSSSLAKQRNGQRQLQIPTSHPSCEHPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVRNNVDSLLNLMFRKANKGGTSIGSLSGSSSISNSSGPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPAFMNGSDWPSPSVNLSMVEEHIKKIVATTGVDVPRLVAGGSSSGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLIFSASRTVFHHNNDAVVQLLRSCFAATLGMSSTSVCGCSGVASLLGHGYCPGGFSPVAPGILYLRIFRCIKDCSILAEDILNLLMLSVKDIAETTVPKQRSDKLKKTKYGMRHGQVSLSAAMTQVKVAASLGATLVWLSGGTALVQSLIQEMLPSWFLSVQDLDKGGASGGMVYKLGGHALAYLAVYSGMFAWGIDPTPVSRRRERVTRSHLQFLASALDGKISLGCDPSLWRAYVAGFLGLVVECTPCWVQEVDLPVLKRLSSGLRQWGEDELAVALLRRAGPEAMGTAAELILGSEW
Length1338
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.08
Grand average of hydropathy0.117
Instability index42.94
Isoelectric point6.67
Molecular weight144937.33
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30095
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.72|      63|      73|     795|     867|       1
---------------------------------------------------------------------------
  722-  795 (111.44/58.89)	LRLWKFNHPP.LEYCVMG..DGAPVGSQLTPEYLLLLRnsqvlsssslaKQRNGQR...QLQIPTSHPSCEHPIFMDS..FP
  797-  867 (93.29/65.19)	LKLWYRQHQAcLASTLSGlaHGTPVRNNVDSLLNLMFR...........KANKGGTsigSLSGSSSISNSSGPGGDDShlWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.81|      12|      16|      21|      32|       2
---------------------------------------------------------------------------
   21-   32 (22.81/13.75)	EWAAEYTKAAQA
   39-   50 (20.00/11.10)	EWAARVAAAAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.01|      14|      34|    1171|    1203|       3
---------------------------------------------------------------------------
 1187- 1203 (22.05/46.54)	LIQEMLPSWflsVQDLD
 1281- 1294 (28.96/ 7.53)	LVVECTPCW...VQEVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.41|      12|      35|      63|      74|       4
---------------------------------------------------------------------------
   63-   74 (21.22/12.30)	AGLAEVLAQP.LL
   95-  107 (16.19/ 7.41)	AALASRLASPaLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     239.86|      60|     437|     549|     608|       5
---------------------------------------------------------------------------
  549-  608 (104.40/52.86)	VSHTLPSQLAGWS.SFMKGA.PLTQSLVNMLASTPAPSLAE..VEKLFEVAVNGSDDDNVSAAS
  934-  972 (47.12/20.07)	...............FMNGS.DWPSPSVNL.......SMVEehIKKI..VATTGVDVPRLVAGG
  986- 1044 (88.34/43.67)	VSLTITYKLDKASeRFLNLAgP...ALENLAASCPWPSMAI..VAALWTQKVKRWSDFLIFSAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.82|      21|      38|     429|     450|       6
---------------------------------------------------------------------------
  429-  450 (32.61/23.17)	DIIGEADSL.....CNEKELNsHAKEK
  465-  490 (31.20/17.43)	QILGDYESLlapppCVIQAAN.HAATK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.62|      13|      36|    1171|    1183|       7
---------------------------------------------------------------------------
 1171- 1183 (24.53/12.61)	GAT..LVWLSGGTAL
 1206- 1220 (20.09/ 9.01)	GASggMVYKLGGHAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.73|      28|      36|     322|     351|       9
---------------------------------------------------------------------------
  322-  351 (45.57/37.62)	ILASNPLSSPNG..RCLGASYSAQWipIDLYL
  359-  388 (42.16/27.10)	IAATNSIEILSGlvKALQSVNRSTW..HDAFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.37|      48|     922|     167|     217|      12
---------------------------------------------------------------------------
  167-  217 (75.43/69.47)	GVSTCHPGVFVVHFVLCIlwQLVDVVLDD.EGLLELTPEKKAQwPTRPEDMS
 1092- 1140 (77.94/56.37)	GFSPVAPGILYLRIFRCI..KDCSILAEDiLNLLMLSVKDIAE.TTVPKQRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      14|      75|    1227|    1242|      17
---------------------------------------------------------------------------
 1227- 1240 (28.01/12.62)	SGMFAWGIDPTPVS
 1303- 1316 (23.68/ 8.70)	SGLRQWGEDELAVA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30095 with Med33 domain of Kingdom Viridiplantae
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