<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30094
Description |
Mediator of RNA polymerase II transcription subunit 14 |
Sequence | MAGLLGQQTVELGAVVRRAAEESYLALRELVEKSQAEAEGKGLGTGANGGWQRSDTEKKIDLLKFITRTRQRMLRLHVLAKWCQQVPLVHYCQQLGTTLSIHETCFTQTADSLFFMHEDLVKAQAPMFDVPSAIEVMLTGGYHRLPKCIEDIGSQNRLSPDEEKRALRKLDASVRYKVLVTPRPKEVSNVSVTDGIAVLRVDGEFKVLLTLGYRGNVDLWRILHMELLVGEKKGPIKLDESRRFALGDDIERRMAASENPFTVLYAILHEFCISLAMDTIIRQANALRQGRWKDAIRSELISDSATGQIGNASLMQLVQDGELDSSGFKIPGLKVNYWLDEKSTSTAEPDSSPFIKIEAGQDMQIKCQHSSFVLDPFTDKEANLSLDLSCIDVEQLILRAITCNRHTRLLNIQRQLCKNVQVSQSPKDVILKRDVTAAKDPKKNAEKKGSSDCFGNEVLQVRAYGQAYISLGINIRSGRFLLQSPENILPPAALMDCEEALNKGSTSATEVFSSLRTRSILHLFAAAGRFFGLKVYQQSQGTLKIPKAILDGSDFMIMGFPHCANAYYLLMQLDKDFRPVFHLLETQCDASDKTNANADAKEAIRFNKINVGQMQILKSESTTNPFDVKLQALQSIMSSADIMDSDLPVQNGIEPLPLLPACSPSFSSIVDEVFEYERGSTAAQNHSILPSSLPATPHLSSLSVGIQGVNARAVSPMHDGGLSHTQANNILKVHPSVSLNSYFPSNFRHLHDVNKSLQLVPSSNSNSNQIPVQSSHSGSLGNSPSDHLVRPSTTTGGLEKLITAGSDGASRKRSLSDFLPIIPSLQGLQPSDPIKRRKISESARSPLPLQAYTSNLQSRASLTYGDVLAERNNCVPATIYASVLLHVIRHCSLCIKHAQLTAQMDSLAIPYVEEVGLRTPSSNLWLTLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFRELWELNGGNTTTQWGVGIRIANTSEMDSHISFDSDGVVLTYNTVEADSVQKLVSDLRRLSNARSFACGMRRLIGVKIDDKLDDNQLSTEMKSQSVNKGNSDASDKLSDQMRKTFRIEAVGLMSLWFSYGTMPMVHIVVEWEIAKGGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSSGYSSMPKQANNIPTQGPLANGSSSSSIHHAPVPSNAAAAHLSSHNLHAAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPNFMNAAQASGHLNNNAGAPQTAPSASRLSATPGVSLSRPTSGVANHVAASLSRAGNAMLASSALASGIGGASVRLAPGAGLPVHMKGEINTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELAAAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGFSQAHGDIATAQRARIELCLENHSGSASADNTESTLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNNHIAFLAMDGSHGGRACWLQLEEWERCKQKVSRAVETVNVSAVAGEVGQGRLRMVAEMIQKQLQHCLQQLRDGPLSAGSTAS |
Length | 1737 |
Position | Tail |
Organism | Setaria italica (Foxtail millet) (Panicum italicum) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade>
Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.153 |
Instability index | 49.68 |
Isoelectric point | 8.09 |
Molecular weight | 189417.04 |
Publications | PubMed=22580951
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082
|
GO - Cellular Component | core mediator complex GO:0070847 IBA:GO_Central
mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP30094
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 443.39| 146| 466| 589| 763| 1
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589- 744 (214.40/139.00) DASDKTnANADAKEAIRFNKINVGQMQILKSESTTNPFDVKLQALQSIMSSADIMDSDLPV......QNGIEPLPLlpacsPSFSSIVDEVFEYERGSTAAQNHSILPSSLPATPHLSSL...SVGIQgvNARAVSPMHDGGLSHTQANNiLKVhPSVSLNSYFP
775- 929 (228.99/143.52) SHSGSL.GNSPSDHLVRPSTTTGGLEKLITAGSDGASRKRSLSDFLPIIPSLQGLQPSDPIkrrkisESARSPLPL.....QAYTSNLQSRASLTYGDVLAERNNCVPATIYASVLLHVIrhcSLCIK..HAQLTAQMDSLAIPYVEEVG.LRT.PSSNLWLTLP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 80.80| 17| 17| 1188| 1204| 2
---------------------------------------------------------------------------
1168- 1184 (28.64/17.37) SSMPKQANNIPTQGPLA
1188- 1204 (28.84/17.54) SSSSIHHAPVPSNAAAA
1207- 1220 (23.32/12.57) SSHNLHAAAMLS...AA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 103.00| 31| 404| 1227| 1270| 3
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1233- 1269 (46.56/57.25) LPFDVSVVLRgpYWI....RIIYrkkFSVDmRCFAGDQVWL
1640- 1674 (56.43/32.01) LPYCVSVRLR..YSFgdnnHIAF...LAMD.GSHGGRACWL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.79| 12| 21| 944| 955| 4
---------------------------------------------------------------------------
944- 955 (22.55/14.06) GKAGSMSWDVRI
968- 979 (23.24/14.74) GGNTTTQWGVGI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.54| 14| 18| 1413| 1427| 5
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1413- 1427 (19.35/15.94) WVpLAALKKVLRGIL
1434- 1447 (25.19/14.88) WL.FAQLPELLKEIL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.68| 14| 18| 983| 996| 12
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983- 996 (26.22/18.14) NTSEMDSHISFDSD
1003- 1016 (23.46/15.43) NTVEADSVQKLVSD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.40| 16| 22| 1040| 1056| 13
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1040- 1056 (22.28/22.10) DKLDDnQLSTEMKSQSV
1065- 1080 (27.12/20.50) DKLSD.QMRKTFRIEAV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 262.62| 85| 261| 1285| 1374| 16
---------------------------------------------------------------------------
1285- 1374 (131.03/81.37) LPCPQFRPFiMEHVA..QGLNALEPNFMNAAQASGH..LNNNAGAPQTAPSASRLsATPGVSLSRPTSGVANHVAASLSragNAMLASSALASG
1548- 1636 (131.59/68.56) LPISVLREF.LKLIAwkKGFSQAHGDIATAQRARIElcLENHSGSASADNTESTL.AKSNIHHDRAHSSVEFALTFVLD...HALIPHMNVAGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 41.49| 13| 24| 1375| 1387| 18
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1375- 1387 (23.03/11.91) IGGASVRLAP....GAG
1396- 1412 (18.46/ 8.02) INTAFIGLGDdggyGGG
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