<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30093

Description Uncharacterized protein
SequenceMDRDERLRRALAAFGGDAWALVDAALAAAARDRPGELRARRDGIVERLYAAAGCSSCDARQPAAPVPRAALAAAGLDEEDGEEAAPVSPEAEGDAAGAGAAEEAEELGAGAGGEPGLESKIVAIRDFLEDPDQPEDELVSLLQNLEDMDVTYKALQETDIGRHVNGLRKHPSAEVRRLVKQLIRKWKEIVDDWVRLHNSGGDGGSSIIADGDSPEKIQGRSHQSPRVSGFQYSPSPQRHNGSTSERANNGFEPTMDMKRRASPVPAHHNSRQMNNNHHSTPMPSAPAKVTRDHKDSLLDLDRLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKNRNAFIRKNGSGGLPARHR
Length357
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.03
Grand average of hydropathy-0.841
Instability index60.18
Isoelectric point6.04
Molecular weight38898.63
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30093
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.62|      16|      19|      50|      67|       1
---------------------------------------------------------------------------
   50-   66 (26.30/13.94)	AAAGCSSCDARQpAAPV
   72-   87 (28.32/11.75)	AAAGLDEEDGEE.AAPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.18|      15|      15|     118|     132|       3
---------------------------------------------------------------------------
  118-  132 (25.74/20.51)	ESKIVAIRDFLEDPD
  135-  149 (24.44/19.09)	EDELVSLLQNLEDMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.37|      17|      19|     213|     231|       4
---------------------------------------------------------------------------
  213-  231 (26.72/19.46)	SPEKIQGRShqSPRV.SGFQ
  235-  252 (27.64/13.65)	SPQRHNGST..SERAnNGFE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30093 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGDGGSSIIADGDSPEKIQGRSHQSPRVSGFQYSPSPQRHNGSTSERANNGFEPTMDMKRRASPVPAHHNSRQMNNNHHSTPMPSAPAKVTRDHKDSLLDLDRLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKNRNAFIRKNGSGGLPARHR
2) PVPRAALAAAGLDEEDGEEAAPVSPEAEGDAAGAGAAEEAEELGAGAGG
200
65
357
113










Molecular Recognition Features






MoRF SequenceStartStop




1) IRDFLE
2) KNRNAFIRKNGSGGLPARHR
3) RDERLRRAL
124
338
3
129
357
11