<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30090

Description Uncharacterized protein
SequenceMADGLDRWRDFFRGAGAGICDVIENAILVAAADAPRELLHRRDRIAERLFTAHRRDAAVPAPPSLGSAAASATPATPIEEDKGSVRRVAEKESKVDSSSNGAHGGGHGHGEEDDDSDSDDERLRRAAASNYGHNYDDDDDDDQEEEDEQQHAADDAEEEEENHEAEELEALTNEIDEESQIVGEVLRIKDLLLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNRLRKHNSQQIRHLVRTLIEGWKVLVDEWVSTTNAALADNSPGSSNPSVVDEEDEEGLPSPPLDEGAFFATQPTSIQLSEFFDEMDEDGNLRHNSDASLGNKRGNNGGRPANYSAIAMQEPPRRSPGAVEKVQFRRPEPARQEPPMRQANLQKPQSSSLQVKPHGMLNDNKQSKPSSYESGPGRPLKAAPLQKPSGDMKPKQTHTAVERRPTTSQMDKSRLAAQSSSGARLELAKPKVYDDGLDNNRKLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMVKSRNNLRNWANGRR
Length535
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.04
Grand average of hydropathy-1.051
Instability index64.52
Isoelectric point5.30
Molecular weight59498.57
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30090
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.86|      17|      17|     365|     381|       1
---------------------------------------------------------------------------
  346-  368 (22.61/ 9.95)	AMQEPPRRspgaveKVQFRRPEP
  369-  385 (32.26/17.23)	ARQEPPMR......QANLQKPQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.08|      21|      23|     108|     130|       2
---------------------------------------------------------------------------
  108-  128 (38.08/19.32)	GHG.EEDDDSDSDDERLRRAAA
  132-  153 (34.00/11.81)	GHNyDDDDDDDQEEEDEQQHAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.87|      17|      18|     459|     476|       3
---------------------------------------------------------------------------
  460-  476 (29.45/17.88)	LELAKPKV...YDDGLDNNR
  478-  497 (22.42/ 7.63)	LEAAKRRLqerYQEAENAKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.54|      14|      16|     392|     405|       4
---------------------------------------------------------------------------
  392-  405 (26.76/13.98)	PHGMLNDNKQSKPS
  411-  424 (25.78/13.24)	PGRPLKAAPLQKPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.93|      10|      17|      58|      67|       6
---------------------------------------------------------------------------
   58-   67 (18.36/ 9.23)	AVPAPPSLGS
   75-   84 (17.57/ 8.54)	ATPIEEDKGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30090 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LFTAHRRDAAVPAPPSLGSAAASATPATPIEEDKGSVRRVAEKESKVDSSSNGAHGGGHGHGEEDDDSDSDDERLRRAAASNYGHNYDDDDDDDQEEEDEQQHAADDAEEEEENHEAEELEALTNEID
2) LSEFFDEMDEDGNLRHNSDASLGNKRGNNGGRPANYSAIAMQEPPRRSPGAVEKVQFRRPEPARQEPPMRQANLQKPQSSSLQVKPHGMLNDNKQSKPSSYESGPGRPLKAAPLQKPSGDMKPKQTHTAVERRPTTSQMDKSRLAAQSSSGARLELAKPKVYDDGLDNNRKLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMVKSRNNLRNWANGRR
3) NAALADNSPGSSNPSVVDEEDEEGLPSPPLDEGAFFA
49
307
263
176
535
299










Molecular Recognition Features






MoRF SequenceStartStop




1) AVEKVQFRR
2) DERLRRAAASNYGHNY
3) RLELAKPKVYDD
357
120
459
365
135
470