<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30087

Description Uncharacterized protein
SequenceMAADAADLERRVMAAVKASAARGDPPLLQAAEASRCAREAAASASASASCGLALAEALVANLCFAHNTGAMWKLLDQAMSSRLVHPLHTLALLTPRVVPNRREQPEAYRLYLELLGRYAVAPVYPECTERKSILAKSIDDAMQLAHRYGFQHLDFGHAVILFVLGLVEMLIDCILDDYGLLNISSHEHDNIYTKNMDFDGKGILLDRGSEHREHLRRKNILMSIEVVEKATANKIAQVFLRLVYLNTPENFNYLLRKLQLLGALKSKNVLPAYILLDSLTMNIQNVISTGYQLDRSRLLGVLVSTQPCSSSAFNIFGAGKGSCWVPFDMFMENAMDGRHLHAISSVEFLTELSKTFKVLNRATWQETFQALWISALRLVQQGPAALEGPFPHLYSRLCMLLAIIPLSIATIVNEEVDKLDGGMVAAIKGELVSSLQILVQFSGLLSPPPAAMHLANSAARKAAVVLSNLKSGNENMYSYSKDSSSIKTVGNMIHLIVEACIARNLVDTSAYFWPGYVVALEESSQAQESPWSSLIEGSPLMELKDALMVTPASSVAELEKLYSFALSGSEEEKLVASKVLCGASLLRGWNIQEHVVQMVLKLLSTFLPLDSRSDERYLQHMPMLHALILGISSVDAVHILSMYGLVPEVAAMLMPLCEIFGSLPASGHRSCNFEEASVYSVFSCAFLSLLRLWKFHRPPIENALSRRGVSVWSEPRLDFLLLLRNSRSALKNLSNVSKSSIFQLDPSLQKPVYIDSFPKLRAWYLQNQACIASTLSSAYNRTNVLQVANIILKIICRKISKGGVLSVNPQSTSNSSMSSPLPGVQEDECQWPTVPAWEVLEAVPFVLEAVLTACAHGRLSSRDLVTGLRDLADFLPASLAAIVSYFSAEITRGIWKPVMLNGTDWPSPAATLPVVEFEINEVLASAGVNINISSQPRSVMPMLPLPIAALISLSITVKMEKFNHLHGIISQGIETCATSSSWPSMQIIGALWSQKVQHWHDFIILTCSQSPFTRDNTAVAQLIRSCFTSFLGPLIDGRSCYIENRGVTNLLGRTLDERTQLVIAPGFLYIRSCRLFPDNNFVCEEILKLVIERARALANDCISERPAHLRSDCMPLSVSSSLVEQMSSLAATMLCHAGGVTLIRLLYEHILPTLLLSAGEDKLGSAGHVCSLFEGYALAYVLIWSGASIWGVGETSPAYTSIYTSKRQRIVDRHLEFMVKVMEGNIVLGCGETTWRSYVLCFVGLLVDFVPAWILEVKLETLQKLASGLRRKWHKGDLALALLERGGSKTVTSVVESLM
Length1299
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.07
Grand average of hydropathy0.213
Instability index50.99
Isoelectric point6.71
Molecular weight142870.36
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30087
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.79|      30|     112|     610|     651|       1
---------------------------------------------------------------------------
  147-  180 (47.60/21.46)	RYgFQHLDFGHAVIlfvLGLVEMLIDCILDDYGL
  616-  645 (56.19/37.32)	RY.LQHMPMLHALI...LGISSVDAVHILSMYGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.86|      22|     497|      25|      80|       2
---------------------------------------------------------------------------
    2-   23 (35.64/21.30)	AADAADLERRVMAAVKASAARG
   30-   51 (37.22/51.77)	AAEASRCAREAAASASASASCG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     245.40|      81|     497|     663|     807|       3
---------------------------------------------------------------------------
  368-  458 (120.77/57.25)	FQALWISALRL..VQQGP..AALEGPFPHLYS..RLCMLLaIIPLSIATIVN.EEVDKldggmvAAIkGELVSSLQILVQFSGLlsPPPAAMHLANSA
  682-  769 (124.63/140.65)	FSCAFLSLLRLwkFHRPPieNALSRRGVSVWSepRLDFLL.LLRNSRSALKNlSNVSK......SSI.FQLDPSLQKPVYIDSF..PKLRAWYLQNQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.71|      31|     423|     581|     613|       8
---------------------------------------------------------------------------
  581-  613 (50.91/44.23)	CGASLLRGWNIQehVVQMVLKLLSTFL.PL.DSRS
 1007- 1039 (48.79/34.48)	CSQSPFTRDNTA..VAQLIRSCFTSFLgPLiDGRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     200.52|      66|     288|     779|     911|      10
---------------------------------------------------------------------------
  840-  907 (107.10/158.09)	LEAVPFVLEAVL.TACAHGRLSS..RDLVTGLR.DLADFLPASLAAIVSYFS...AEITRGIwkPVMLNGTDWPS
  912-  984 (93.42/32.91)	LPVVEFEINEVLaSAGVNINISSqpRSVMPMLPlPIAALISLSITVKMEKFNhlhGIISQGI..ETCATSSSWPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30087 with Med33 domain of Kingdom Viridiplantae
Unable to open file!