<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30082

Description Uncharacterized protein
SequenceMDGGHGPRQPMSPAISASAVVPQQRQMQLHHHPARPAIADLFTLYLGMNSKQRAEDPSRESSNKLQKRVTAMNRDLPPRDEQFISDYEQLRMQYPDQDQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDNLLPSLLNAVSSMEAPMGQGVPVTGGGPVTPSSSAMAMPNAPNFHPSNPASPLSVMNTIGSPTQSGVDQPVGANVSPIKAAEFSSAAQLSAAARGDQSRRGAEIGYLHLLSCRIILAGLESNLKPATHAVIFQHMVNWLVNWDQRPHSMDEADAMQTWRMEKPLHEWMHLCLDVIWILVNEEKCRIPFYELVRCNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVTNLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSQSQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNSLSSDPRKVETTRKIISFHKEDKSLDANNIGPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTNLDERATGMFWVLSFTMAQPACEAVMNWFTSAGMADLIQGPNMQPNERIMMMRETYPLSMSLLSGLAINLCMKLAFQLEETIFLGQAVPSIAMVETYVRLLLIAPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLKDFFFVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQFEVQRGHLAQDLLSKAITNLSFFIWTHELLPLDILLLALIDRDDDPYALRIVISLLEKPELQQRVKAFCSSRSPEHWLKNQHPKRVELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSSLLAFHPLRFTFVRDILAYFYGHLPIKLIGRILNLLGVSTKTPFSESFAKYLVSSNSSVCPPPEYFANLLLNLVNNVIPPLSSKSKSNPADTTRSTFNKHHASSQAGGIGNTDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVSAAQIVSSLVQIIAHVQAMLIQSNSGQGMSGGLGQSSGLPTSPSGGGAESAGPNQANSAASGINATNFVSRSGYSSQQLSVLMIQACGLLLAQLPPEFHMQLYSEAARVIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQVPNPVDASEITDIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVIEILRPDVQHLLSHLKTDPNCSIYAATHPKLVQNTS
Length1613
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.08
Grand average of hydropathy-0.086
Instability index46.41
Isoelectric point6.85
Molecular weight180944.46
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30082
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     303.14|      82|     635|     369|     451|       1
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  369-  451 (147.86/114.50)	MLDQHLHCPTFATHR.FLSQSYPSIAGESVTNLRYSPITY...P.SVLGEPLHGED...LANSIP....KGGLDwERALRCLRHALRTTPSPDWW
  734-  779 (42.52/24.08)	................FLGQAVPSIA.MVETYVRLLLIA....P.HSLFRP.HFTT...LTQRSPsilsKSG.......................
 1008- 1094 (112.76/80.16)	MVDVLLHHIQFEVQRgHLAQ...DLLSKAITNLSFFIWTHellPlDILLLALIDRDddpYALRIV....ISLLE.KPELQQRVKAFCSSRSPEHW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.76|      45|     629|     915|     961|       2
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  288-  316 (31.58/14.09)	....HSMD.EADA..MQTWrmEKPLHEWMHLCLDVI...............
  915-  961 (69.38/50.24)	DFLMGRMDKRGQA..IQAW..QQAETTVINQCNQLLsPSAEPNyVMTYLSH
 1545- 1591 (72.80/43.52)	DFLHHAVMYEGQGgpVQST..SKPKLEILTLCGKVI.EILRPD.VQHLLSH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.55|      57|     328|     491|     550|       4
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  491-  550 (91.52/77.14)	LLRLtnSETQCwQDWLLFADIFFFLMKS..GCIDFLDFVDKLAS...RVTNSDQQILRSNHVTWL
  825-  886 (86.02/59.74)	LFRL..AENLC.MNLILSLKDFFFVKKElkGPTEFTETLNRITIislAITIKTRGIAEVEHMIYL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.14|      15|      20|    1149|    1168|       5
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 1149- 1168 (17.29/26.04)	IADrVLA.FYSSLlafhPLRF
 1171- 1186 (23.85/13.78)	VRD.ILAyFYGHL....PIKL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.68|      15|      15|    1206|    1220|       6
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 1206- 1220 (28.14/17.43)	FAKYLVSSNSSVCPP
 1224- 1238 (26.54/16.02)	FANLLLNLVNNVIPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.86|      10|      14|     660|     669|       8
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  660-  669 (20.76/11.07)	MFWVLSFTMA
  677-  686 (21.10/11.37)	MNWFTSAGMA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.07|      34|     785|     694|     727|       9
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  694-  727 (62.32/34.73)	MQPNERIMMMRETYPLSMSLLSGLAIN..LCMK.LAF
 1480- 1516 (48.76/25.65)	LRPVNSVAMLRIAFRILGPLLPRLAFArpLFMKtLAL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     321.29|     105|    1161|      84|     197|      10
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   84-  197 (171.93/128.63)	ISDYEQLRMQYPDQD...QLQAVTESVLISfVLQCSSHAPQsefllFATRCLCARGHLRwDNLLPSllNAVSSMEAPMGQ..GVPV..TGGGPVT..P..SSSAMAMPNAPNF..HPSNPASPLSVM
 1267- 1384 (149.36/89.45)	IGNTDGQRAFYQNQDpgsYTQLVLETAAIE.ILSLPVSAAQ.....IVSSLVQIIAHVQ.AMLIQS..NSGQGMSGGLGQssGLPTspSGGGAESagPnqANSAASGINATNFvsRSGYSSQQLSVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30082 with Med23 domain of Kingdom Viridiplantae
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