<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30079

Description Uncharacterized protein
SequenceMDGAANWRPTQGADPAAVAAAGGVDPNAAAPAGGDWRTQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMESQTKTQQNPGNAQVIPNQNPPGPAPGLPPQGSNPAQSSAIPLMSQQQTRQPNASASVQGSLPSIGQSLPGVSQTSTLQNMSGMPQNTMNSGLAQGAPQDMYAAQRQMAGRQQQQQQQQQQAQNQLIYQQQKILMNQKLQQNSLMQPHIQQQQSLLQSTQMQSSQQPMMQMSPGLQPAQSIISQTQPMAMQSATQSGIQQNPLNSVQSVQSLLQQPTQSVMRQQQHPQSMHQQPSLQQTQQIQQPNIPLQQQQPQLMGQQSNLQQNQLMSQQNGAGLPVQSNNLLNMQQTQQMLNQQSMPLHQSQQLAPQGNMSSLHQQQQQQQQNQQQQQQQQQQLLGTTPNVANSQRMHMLQPAKAMQQPQQQQHAQQPSMGMMQPQSQQNQLQQSQQHMMSQFQSQSNQLQQQLGMQQRLQTSAGMLLQQNNIDQKQYIQAQRGLQEVSSSTSVDSTAQTGHTGAGDLQEELYQMIKSLKDQYFAELNDLYNKISMKIQHVDNHMPAQKSSDQYEKMKNFKALLERTLHFLQVNKSSIQPGFREKIPIYERQIVNILNSQRRKPVPAPGQQQFQQPGGQASGSNISQQHQNSQGLQQHDSHTNQMPQASLPSMSTGVQSSGAPGIQHVPAPQATNFGVSTTQQNVTNAPQAGSNLEGAQGNNFNPVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNAMSTMQPNTNSMQANASSLQQLKQQHQEHQIMQSQQMKRQQMLHQQIHQKQLHQSQLPIQQQLQKQQQQGQMQVPQLHSGNDMNELKVRQGAAMKSGMYQQLGQRNYYQQMKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQIKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQTSLAHQSQSIAVNTPGISASPLLAEFTSADGSQANVPTQVPTKSNAAERPLDRLLKALRTTQRQSLTAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGSGTSKKMKRDTSAMPLNVSSPGSVNDSLKQSYSMDTPELQSTATSRVKWQKAEVNHALMEEIQEINQQLIDTELHVSEDDAESFAATSEGAEGMVIRCTFTAVAVSPSLKSMFASAQMSPILPLRLLVPASYPKCSPVLLDKFPDEQRNSDDLSTKAKSKFGILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWESCVGA
Length1328
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.03
Grand average of hydropathy-0.774
Instability index73.09
Isoelectric point9.26
Molecular weight145390.03
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30079
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     858.44|     100|     102|     100|     199|       1
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  100-  199 (171.03/34.88)	MLSMESQT..KTQQNPGNAQVI...PN.............QNPP.....G....PAPGL.PPQGS.NPAQSSAI.PLMSQ..Q.........QT.RQPNASAS.VQ.GS.LPSIGQSLP.......G.......VSQTS..TLQN..M..SGM.....................................PQNTMNSGLAQG
  211-  311 (107.92/18.83)	MAGRQQQQ..QQQQQQAQNQLI...YQ.............QQKI..............L.MNQ...KLQQNSLMqPHIQQ..Q.........QSlLQ...STQ.MQ.SS.QQPMMQMSP.......GlqpaqsiISQTQpmAMQSatQ..SGI.....................................QQNPLNS..VQS
  315-  414 (119.11/21.68)	LLQQPTQSvmRQQQHPQSMHQQ...PS...........lqQTQQ.....I....QQPNI.PLQQQ.QP.......QLMGQ..Q.........SN.LQQNQLMS.QQnGAgLPVQSNNLL.......N.......MQQTQ..QMLN..Q..QSM.....................................PLHQSQQLAPQG
  422-  514 (106.61/18.49)	QQQQQQQN..QQQQQQQQQQLLgttPN............vANSQrmhmlQ....PAKAMqQPQQQ.QHAQQPSM.GMM.Q..P.........QS.QQ.NQLQQ.SQ.QH.MMSQFQ...................SQSN..QLQQ..Q..LGM.....................................QQ..........
  515-  641 (65.18/ 7.96)	..........RLQTSAG...ML...LQ.............QNNI.....D....QKQYI.QAQRG.LQEVSSST.SVDST..A.........QT.GHTGA.GD.LQ.EE.LYQMIKSLK.......D.....qyFAELN..DLYN..K..ISMkiqhvdnhmpaqkssdqyekmknfkallertlhflqvNKSSIQPGFREK
  642-  756 (101.10/17.09)	IPIYERQI..VNILNSQRRKPV...P................AP.....GqqqfQQPGG.QASGS.NISQQHQN.SQGLQ..QhdshtnqmpQA.SLPSMSTG.VQ.SSgAPGI.QHVPapqatnfG.......VS..T..TQQN..V..TNA.....................................PQAGSNLEGAQG
  767-  842 (74.97/10.45)	..................MGAA...LQ.............QGST.....G....P...M...QGAmNAQQQSSS.NLLSNnaM.........ST.MQPN.TNS.MQ.AN.ASSL.QQLK.......Q.......QHQEH..QIMQ..S..QQM.....................................KRQQM...LHQ.
  857-  962 (112.53/20.00)	....QQQL..QKQQQQGQMQ.V...PQlhsgndmnelkvrQGA......A....MKSGM....YQ.QLGQRNYY.QQM.K..Q.........GS.AFPISSPQnLQ.AS.SPQISHHSP.......Q.......VDQHN..LLQS..QikTGT.....................................PLHSANSPFVPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.29|      46|     202|     997|    1070|       2
---------------------------------------------------------------------------
  969- 1021 (65.63/36.06)	PSPIPVDS...DKPLSNLSSLTSTGQaghQQ.........tslaHQSQSIAVNTPGISASPLLAE
 1033- 1094 (62.66/64.08)	PTQVPTKSnaaERPLDRLLKALRTTQ...RQsltaavsdigsvvSMIDRIAGSAPGNGSRAAVGE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30079 with Med15 domain of Kingdom Viridiplantae
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