<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30075

Description Uncharacterized protein
SequenceMTAAGMGSDGRLRRALAAFGGGGDVWDLVDAALTAAARDNPDELRARRDGIVERLYAGARCHNCDAGAPSPPQPRKAPEAAAAAEAVSPVSPDEEVDADGLGEDDDDAGVESKILAIRDFLEDPDQSEDEMVSLLQNLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVKLLVRKWKEIVDDWVRLHNSAGDGGSSIISDGDSPDKVQPKNHQSTKASDFKYSPSPQSHNGFSSERSIYQNSVESTMEKRRTSPAPAYHNTKPNNNSNYSTTSSSVLARTMREQKYTLMDPGKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNTFIRKSSGGGGLPARHR
Length352
PositionUnknown
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.05
Grand average of hydropathy-0.870
Instability index57.04
Isoelectric point6.17
Molecular weight38556.19
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30075
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.19|      29|      29|     227|     255|       1
---------------------------------------------------------------------------
  227-  255 (52.89/31.20)	PSPQSHNGFSSERSIYQNSVES....TM.EKRRT
  257-  290 (44.31/25.17)	PAPAYHNTKPNNNSNYSTTSSSvlarTMrEQKYT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.83|      13|      29|       1|      13|       2
---------------------------------------------------------------------------
    1-   13 (23.55/12.70)	MTAAGMGSDGRLR
   33-   45 (22.28/11.67)	LTAAARDNPDELR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30075 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGDGGSSIISDGDSPDKVQPKNHQSTKASDFKYSPSPQSHNGFSSERSIYQNSVESTMEKRRTSPAPAYHNTKPNNNSNYSTTSSSVLARTMREQKYTLMDPGKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNTFIRKSSGGGGLPARHR
2) HNCDAGAPSPPQPRKAPEAAAAAEAVSPVSPDEEVDADGLGEDD
193
62
352
105










Molecular Recognition Features






MoRF SequenceStartStop




1) DGRLRRALAAF
2) DIHDIPKPKNRNTFIRKSSGGGGLPARHR
3) GVESKILAIRDFLED
9
324
109
19
352
123