<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30073

Description Uncharacterized protein
SequenceMDGSSSPAEAGGVAQVAVAVRGDGRGSRRAARWAAATMVPAGGRVALVHVIPPVSFVPSPSGERVPVEKMEREVVEIYAQDRRARAQEVFLPFRRLCARRTVETVVLEGDSVAEALVSYAAESGVRSLVVGSASLSWLRRMLRIQDVPFMVLKTMPSSCNVFVVSRRRLTMKFANLARTSKSNNSKIQSISHKAFNQIQRDWLQDKQSLNNLADDEIPKYSGNSSSDSCSQVCSSLSTSSNAVKSSESHRRGLLGSLGRKTPRREWNKDNDAIGQCKEIRYVALTSVEESQPVDEVATLRKELKDTLMMYDRACENLANAKEKIQILSGECHEDVNKVQYALQREEQLKQAVADEKTKHLHAIGAVEMAKESFAREAYSKHKAEFVANMVSTEKAKVVDALLSTGKSCRQYSKHEIELATDYFSDAKKIGEGGYGTVYKCTLDHTEVAVKVIQQDSSDKIDEFLREVEILSKLHHPNLVLLLGFCPEIGCLVYEYMENGSLEDQLINNKGQPLHWFLRFQIIFEVSCGLAFLHGTKPEPIVHRDLKPGNILLDKNYVSKIGDVGFAKLISDLVPEGLTEYRETVIAGTLFYMDPEYQLTGTVRPKSDLFALGIIILQLLTGKRPHGLICSVEEAIEKGILSDILDRSQTDWPIAEAEMLAKLGLRCTALKCRDRPNLESEVLPELENILSRVTASLKLENIIAPSHFICPILQEVMENPYVAADGHTYEHRAIKAWLKKHKVSPVNNQRLPHLSIIPNHSLQAAIQQWKLHTSF
Length774
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.265
Instability index53.17
Isoelectric point7.57
Molecular weight86282.88
Publications
PubMed=22580951

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30073
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.70|      30|      30|     379|     408|       1
---------------------------------------------------------------------------
  379-  408 (45.60/32.68)	SKHKAEFVANMVSTEKAKVVDALLSTGKSC
  412-  440 (47.20/34.08)	SKHEIELATDYFSDAK.KIGEGGYGTVYKC
  441-  464 (25.90/15.35)	TLDHTEVAVKVIQQDSSDKIDEFL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.62|      28|      35|     706|     736|       2
---------------------------------------------------------------------------
  706-  736 (43.13/41.46)	HFICPILQEVMenPYVA.ADGHTYEhRAIKAW
  740-  768 (46.49/31.54)	HKVSPVNNQRL..PHLSiIPNHSLQ.AAIQQW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.58|      15|      35|     475|     490|       3
---------------------------------------------------------------------------
  475-  490 (26.08/19.87)	HPnLVLLLGF..CPEIGC
  511-  527 (26.49/15.10)	QP.LHWFLRFqiIFEVSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.74|      21|      66|      28|      48|       4
---------------------------------------------------------------------------
   28-   48 (37.77/29.02)	RRAARWAAATMVPAGGRVA..LV
   95-  117 (30.98/22.40)	RLCARRTVETVVLEGDSVAeaLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30073 with Med32 domain of Kingdom Viridiplantae
Unable to open file!