<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30071

Description Uncharacterized protein
SequenceMEIEEDAGEMGEMEAPAVSTVAVAISGSRSSRHALKWALDKFVPEGRVLFRILHVRPAITMVPTPMGNFIPISQVREDVASAYRKEAEWQASNMLLPFKKMCAQKKVEAEAVLLESDDVAAAISEEIGKFNICKLVLGSSSKNIFRRKLKGSKTATKISESIPSFCTAFVISKGKLSFVRSATSDIVETPRSISSSTVSSPSSRSLSSCTPSEWGDTYGTANVSFRQPSLPLQRDQALAIINNLSNRRASSSGSVVSEISNNDDPALTSSHSIISEMQFSSGSSGNSIYKSFHRDNLTDNSDRASVSEISENVNHSNDQDDLRLQIERLRDKLQHFHKLHECAQQESFDTTQKLHKLRTQHIEDEIKLKETELTEDRVRRLVRKKEMEEHKAGREAEFKQCSGEIEEKHSYSGQEANENETGKKIAGRCFDDYNRYTWEEIQASTSSFSSALMIGKGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLMMLGACPEHGCLVYEYMENGSLDDMLQRRNNTPPLTWFDRFRITWEVAATLMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMGQYLSTMVKNTAPVGTLCYIDPEYQRTGVLSMKSDVYALGIVILQLLTARSPMGLAHVVETALEDGCFADILDATAGQWPLNETQELAALALRCSEMRRKDRPDLNEHVLPTLERLKDVATKARESVLKGHTAPPSHFICPILQEVMIDPYVASDGYTYDRKAIELWLSTNDTSPMTNLRLPNKGLIPNHSLRSAIMDWRSKSK
Length802
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.409
Instability index48.06
Isoelectric point6.42
Molecular weight89483.59
Publications
PubMed=22580951

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30071
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.66|      20|      30|     235|     264|       1
---------------------------------------------------------------------------
  242-  264 (30.01/41.61)	NNLSNRRASSSgsvVSEI......SNNDD
  295-  320 (28.65/12.52)	DNLTDNSDRAS...VSEIsenvnhSNDQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.18|      51|     382|     176|     228|       2
---------------------------------------------------------------------------
  176-  228 (80.64/57.29)	LSFVRSATSD.IVE...TPRSI..SSSTVSSPSSRSLSSCTPSeWGDtYGTANVSFRQP
  555-  611 (74.54/44.66)	LMFLHSSKPEpIIHrdlKPANIllDRNLVSKIGDVGLSTLLPS.MGQ.YLSTMVKNTAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.67|      15|      28|     338|     354|       7
---------------------------------------------------------------------------
  338-  354 (21.73/18.26)	KLHECAQQEsfDTTQKL
  367-  381 (23.94/12.96)	KLKETELTE..DRVRRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.40|      25|     174|     266|     293|       8
---------------------------------------------------------------------------
  266-  293 (37.98/34.64)	ALTSSHSiiSEMQFSSGSSGnSIYKS.FH
  443-  468 (42.42/26.68)	ASTSSFS..SALMIGKGSYG.TVYKAkFH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.67|      27|      32|     114|     142|       9
---------------------------------------------------------------------------
  114-  142 (39.59/30.96)	LESDDVAAAISEEIGKFniCKLVLGSSSK
  149-  175 (46.08/29.49)	LKGSKTATKISESIPSF..CTAFVISKGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.89|       9|     109|     430|     439|      10
---------------------------------------------------------------------------
  430-  439 (16.75/18.55)	FDDYnRYTWE
  542-  550 (20.14/15.20)	FDRF.RITWE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30071 with Med32 domain of Kingdom Viridiplantae
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