<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30066

Description Uncharacterized protein
SequenceMMQQHPQAQAAALAVAPSASAVAPTVTHPNDPAGGDAPPKQVAQAMERLGRAGRLIADIRLGADRLLEALFVAGGAPPYSAPQHIDRTARAVVQEEATMRRHFQDLRALGRQLEESGVLNGALKARGNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEVLSHLHDGEPGVTKKPRLSASNGEQEEESLSEILKNLENEVPNMKIFTYRHLDWSKRASSLASLMDDDFVDPSKELNLQNTGNLRSSALTTSMDQVAVIELLVPSIFRAIVSLHPAGSTDPDAVAFFSPTEGGSYLHARGVSMHHVFKHVKEHADKALQYFISVEPSKALSLLLRWIASYQTLFTKVCSKCRRLLMMDKSLALLLPPVHRPYHQTSNVGPDLQEAYHIGCSSYDG
Length420
PositionTail
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.06
Grand average of hydropathy-0.268
Instability index44.80
Isoelectric point7.33
Molecular weight45961.81
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30066
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.35|      25|     101|     278|     307|       1
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  278-  307 (35.23/33.29)	MDQvaVIELLVPSIFRaivSLHPAGSTDPD
  382-  406 (47.12/28.94)	MDK..SLALLLPPVHR...PYHQTSNVGPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.90|      19|      37|      33|      52|       2
---------------------------------------------------------------------------
   33-   52 (30.51/18.19)	AGGdAPPKQVAQAMERLGRA
   73-   91 (35.40/17.41)	AGG.APPYSAPQHIDRTARA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.30|      11|      29|     185|     195|       7
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  185-  195 (20.03/13.92)	EVLSHLHDGEP
  217-  227 (18.27/12.09)	EILKNLENEVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.08|      28|      34|     308|     341|       8
---------------------------------------------------------------------------
  308-  335 (50.64/35.63)	AVAFF...SPTEGGSYLHARGVSMHHVFKHV
  342-  372 (42.43/18.53)	ALQYFisvEPSKALSLLLRWIASYQTLFTKV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30066 with Med27 domain of Kingdom Viridiplantae
Unable to open file!