<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30064

Description Uncharacterized protein
SequenceMVEGDVLLDLDKLPIKRLEAIDEAGNEHYPPDTSNKEQHLAAIRRIDFSWVIEKDAKKAKKAAEADTAQQAWPWQGLMESLQQAQQELSVVIDLIGTVEANDAVAVASTTKPKSQPNEILVDMAVSAATKLQRLRHLSRYFKQSAKTMEQQFQKETRFYNSLIRLQQNWKVKRQRVVGSGPGSEGFMFDLVDSYQLDTTTMPRVSPLSLVPIDQDSSGTLSVQIPQKSFRSLSLQFYGDTANNAESSASKKKEDTLSSSSSETDKDALENDDVNKSVKQAHSILRDIHKSIFEEQVFDMVIRDTFTQSQGINVTGMCEDFLQLAIGQECSLCLLLVPSGQNSDSETVGQEDHMDSEYSGNLAVATVNGKQESLNKDLRGFPNPKSLEIYLLHMFHEKIVRKIREKSRFVVRYQSPAQIAPEECGLLGHFCMTVAHRIFSNKVHLELESVVSRVPYLHLCSLPTWHSRTSSWSLCLKVPQPILAADRITKPSDVHEPRYKSRSQFNTKVILKDGQISLMGEGSPSIAGSLTGKPSDGRLINSYNCDLEDLPMMLLQQVASQVIHWLHEEAMVLGMNVTRDFLCLYFDLDQGETLGLVAHVDPDDAYGCISWYLTVDHPTEEGKMSADNLELEKRRFLGYLSLEVLYSTLMDLIKLCSTGVQH
Length661
PositionHead
OrganismSetaria italica (Foxtail millet) (Panicum italicum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Cenchrinae> Setaria.
Aromaticity0.07
Grand average of hydropathy-0.360
Instability index46.39
Isoelectric point5.47
Molecular weight74178.33
Publications
PubMed=22580951

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
production of miRNAs involved in gene silencing by miRNA	GO:0035196	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30064
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.27|      46|     139|     330|     381|       1
---------------------------------------------------------------------------
  331-  380 (75.95/58.77)	LCLLLvpsgQNSDSETVGQEDHMDSE..Y...SGNLAV..ATVNGKQESLNKDL..RGF
  581-  635 (66.32/33.42)	LCLYF....DLDQGETLGLVAHVDPDdaYgciSWYLTVdhPTEEGKMSADNLELekRRF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.00|      24|     252|     203|     226|       2
---------------------------------------------------------------------------
  203-  226 (41.76/27.00)	RVSPLSLVPI....DQDSSGTLSVQIPQ
  452-  479 (40.23/25.74)	RVPYLHLCSLptwhSRTSSWSLCLKVPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.36|      13|      41|     480|     492|       8
---------------------------------------------------------------------------
  480-  492 (23.44/14.87)	PILAADRITKPSD
  523-  535 (23.92/15.32)	PSIAGSLTGKPSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30064 with Med17 domain of Kingdom Viridiplantae
Unable to open file!