<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30056

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMNEDKLRQMAAAQEAGVVDTSDAEDEDDDDAGNAAKKRAEELRDAKTEMFKHINDAQQEILYTIDFLGLLLSKDNPRGSNYMSPTLKQSGVPDGSLAYDKWPLKQPNERQRKQQDLVAKGWTMEGLGASADALLDAATKLEKEVRKETQYWGQILSIKKRGWSLRRLAQNSGTLGVQFGFLEANPMFQKQNRGFAPLRAKEDGSIILDQALVQKPKSLRVRIFSRGETVGSSSQNTLALAPESDLEIEDLIRRARDSLFEEELFHEISIESRQLLSYNVRYRDHAIIIPTGLDREDSKDGENTEIHVDLIGIDDVDELSSRRPYDGLAEDVALTLRLLLTHVHSQRLRRRTQPPPALTDRPRPEQQYPIIRILLNFIHHHAATDALRSYLTTVEQILRRAGLPFETSFESAFASLSESVSTAYSTRSRLPQLDALMAVLSRPLTTTATISLPSTSDKCADTREHLAITLRTLITPPAQGTDISLTIPPSLAATLYHDKRQDQKRSLSFDALDSLKDYLDHALSMDLLLNLAAKEHARLRPSHRRQELQYAAKKGENKGAITIDLAARISGKEGCLKVTWCAPLAELEGDEAIWRESDGESRSFREVLTAFVDTTTP
Length616
PositionHead
OrganismMacrophomina phaseolina (strain MS6) (Charcoal rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetes incertae sedis> Botryosphaeriales> Botryosphaeriaceae> Macrophomina.
Aromaticity0.06
Grand average of hydropathy-0.528
Instability index51.73
Isoelectric point5.67
Molecular weight69042.97
Publications
PubMed=22992219

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364140
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP30056
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.51|      37|      38|     425|     462|       1
---------------------------------------------------------------------------
  387-  420 (43.55/21.51)	RSYLT.TVEQILRRAGLPFETSFES..AFASL..SESVS...
  426-  462 (58.81/37.25)	RSRLP.QLDALMAVLSRPLTTTATI..SLPST..SDKCADTR
  464-  503 (35.14/18.26)	..HLAiTLRTLITPPAQGTDISLTIppSLAATlyHDKRQDQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.39|      26|      38|     108|     133|       2
---------------------------------------------------------------------------
  108-  133 (45.06/31.85)	ERQRKQQDLVAK..GWTMEGLGASADAL
  147-  174 (42.33/29.46)	ETQYWGQILSIKkrGWSLRRLAQNSGTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.21|      34|      44|     245|     285|       3
---------------------------------------------------------------------------
  245-  285 (46.17/42.04)	LEIEDlirrARDSLFEE...ELfheISIESRQLLSYNVRYRDHA
  292-  328 (53.04/30.05)	LDRED....SKDGENTEihvDL...IGIDDVDELSSRRPYDGLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.77|      14|      38|     521|     534|       8
---------------------------------------------------------------------------
  521-  534 (21.67/13.32)	ALSMDLLLNLAAKE
  559-  572 (22.10/13.72)	AITIDLAARISGKE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30056 with Med17 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNEDKLRQMAAAQEAGVVDTSDAEDEDDDDAGNAAKKRAEELRDAKTEMF
1
50










Molecular Recognition Features






MoRF SequenceStartStop




1) NEDKLRQMAAAQEAGVVDT
2
20