<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30052
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLIMEDDQYMDLFNEAEQIPISVPTPPVKKLAQRLDELGESGCCQKISWSKSGCVASITRDGRGVNLRAFQRNPADGKWILGEEAPLQIPSVHEEFPLVHVSWGHLGVDLAVVDAAGRILVYTAAQAADRMKLSREPFSDHESESNALVGLHWLPVAPQQVKYHMIWSGDRTDDKWQYRMTSHPWKEPHNPVHPRLSLGAFICFTRGGTIRLLFQQPDQQWYEATAEVEASNSAKDAFTHASFTSDSEHSLLLATHTVSGSILVYRVKINWNAQPGKSASPTFDISPLKAEDNCCPLGTNFDTGDATLGPSQKLSLPAKLTHLSFIATGPDPGPSPSFPTVLAVFCHTPAPVPSLMDQTHTQQPPFSIVARWELHSSTYSLHSGFEQLTTKKKAPGLVGQRQNMSLKRLPDVVLGSATLGFTSLDFHTRFAFYQSTGGVEFRDRYTMDVVTADLSENKVSSLPQAGFSFPASDPALHMVLSPSACMLALLQPDGTITLKPMEFGLGSWDSGENDPKLNAAIAVLVLQYSSASLQYMPGDDLFAIMPADMDYNLRRLFLRGTHHCMNVVADYPPEDASQKSFEAIFRNNVLRGCLSTQNLLGMSANGSRDLSSKLAWITLNLRFTSFLLSIPTNQARGGGPESFTMETAKSVTGLLKWTMDIMVYIMNDLIELSHECKDHEADRGFVQKRLTRLLTHGMDKLLDNVDSAKVLYWDLRWLGLSEEKREKQYLEKHAVDVLRKIVISCKDGRRRRCVRCGSEMEDMEWMGGQNKCACGSPWAMGSFSKRL |
Length | 788 |
Position | Tail |
Organism | Macrophomina phaseolina (strain MS6) (Charcoal rot fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Dothideomycetes incertae sedis> Botryosphaeriales> Botryosphaeriaceae>
Macrophomina.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.272 |
Instability index | 42.90 |
Isoelectric point | 6.21 |
Molecular weight | 87528.79 |
Publications | PubMed=22992219
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP30052
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 138.22| 45| 81| 381| 426| 1
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381- 412 (38.44/25.39) .................................................SL.HSGFeQLTTKKKAPGLVGQRQNMSLKRL.PD
413- 494 (49.44/29.07) VVLGSATLGFTSLDfhtrfafyqstggvefrdrytmdvvtadlsenkvsSLpQAGF.SFPASDPALHMVLSPSACMLALLqPD
497- 538 (50.34/29.74) ITLKPMEFGLGSWD.............................sgendpKL.NAAI.........AVLVLQYSSASLQYM.P.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 210.71| 60| 141| 64| 123| 3
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64- 123 (106.30/58.48) RGVNLRAFQRNPADGKWILG.EEAPLQIP...SVHEEFPL.VHVSW...GHLGVDLAVVDAAGRILVY
171- 205 (23.75/ 7.89) ..........DRTDDKWQYRmTSHPWKEP.hnPVHPRLSLgAFICF......................
207- 266 (80.66/42.76) RGGTIRLLFQQP.DQQWY....EATAEVEasnSAKDAFT...HASFtsdSEHSLLLATHTVSGSILVY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.69| 12| 38| 650| 661| 4
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650- 661 (22.65/14.21) KSVTGLLKWTMD
689- 700 (22.04/13.63) KRLTRLLTHGMD
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