Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MDSIKNSSTSVSAVGGYGVISYRTFSATSSLDATTAKAAELDGLSCVEARLREAKRLVYLDRQKTVLWLFEPGTSPPALDHGSLQSQQLNGLQLSSQSEGDIKAADLARLAGRHHSLSAAQAGGQYGSTASNARALQAANIRAFQSNQQGSGVSAANSDATRQHDPLSVYESFMSAVVGSISYNLSRFHHMIPLNYRTFVSYPRPTTAENPDDDDDDFTILGGMDCLITTLDAHLSTSGTMVISTSVSNSTEIHQLERILTVYDAHEDFLGELVRISPCGIIARYVGHETSAVGSERDGLGSTKRARAIQQWKADTLRWLRMKGLVLPDMDEEGKWVRIQLQPPQHATKDTNDPSATLCRECLWPAALCFFYGPIREDGDLSTADVPGHLRSHDDQDPGVMWWQGPSKQGFTDPLWQAYNWFLGKPEREKAIEARKKARQAQEENVQPTQEPTMAYPSSPLYSRGSAYGDLQVVSGVYPTPPDAVLPPNAGGHAAMDGLLMSQPNQEFISQTGNTGTGADGSATAEHPAPPGTTPGEHLDPSRAMNTPADGQDAEADNNDDLFEDMDEEMFGGNDVTEADFNFFDDGEGDFADLMDVSQPATFEEQQQDTSPAEAKFEDASPVVQVSGQVHAEEEPVTYKSEITATPAVPSADIEMSEPKDETKPGDIFQDPEIQVDEPKGEAEEEVQITREPSPPLGPARIHEKLFPSVHAREADTGAKDFAKTKAEGGAIFNTVDFNQMMQLTDSKYAAGGQFHFPEKANGDTMTAMNYRSANLSIRAPPGQISRPTSSAQSLTLESTSKFIRSIVVPKHTSDDSTMDGLSEDSDSYSDISASSGSFNEETASVAHQKDSGLLAPVHKKWGSSNAGTPMVGTPGTLQLDSGAQDTMIGESDGIMSELPALSSLEPGPSDWPLARLPPPMVKVRRRPGADTRSRRGSFSLASAASTPSSDGRSEAFTEAPALNLKEVINITQMLADQVIHSTLDLMPEDDDPSLLCSERQTGGCRKLAPIQKIQNAVRDLFQQVSECDMLKYASIQDVIPEPAAANKTQHKSVQRRNNNADPQGSMFFTIPTPHVRLRRGEDTWDVLPPALSFWEPLGLSPTNGPKNIMAYCVYPSSDQLKKPVTSFIDSISMAYESCKFGSHVRGPDIEQIATNGRVSAFVNSGEGDHWRPTAQNCLQAVRDTCSSLGRHLSRIDFKKHAKAEDSSTVDALVVYLVNPFSDPHNLWQLCSAFWALFQAYLPSVPSNRAVDDSKPELVLQLVPVKYIASFEAPVVLEPSLLTRFAREIYDRCPPREPSHDHTALSIYSAPSIQLEESLPKSIPFRVTSEPPSDLLHENSYIHVGYAISVDGTWLTAAWTDNPGKHQATVSYCLNNRSFLEVAREIYQTSLEIMSARRVTWRLCIARAGVMEREEQDAWQALVTSPCPLVIGTALVSIEPNPSFCMTSNLPALSASQTLSSGNAGVSTPGGNTPQPGVSPDAHGFTPAATPSDGNTSAPAVDPANDPDARLIDVTDESWGVILQHRLHNSNSTTEFRPALASGYLIKRGADSNTDALASSTGKSDNPDTPRGPVAVGVNLLWIGSTPGGHTPQRAAAAAAAAQAQAAAAAHAAAQAHAHTHQSATPTPTPSAHNPNISIPLQHLEAAAAAAGGASGNGNVASSAGATGGMGSNINSPLPSPAGGAMGQGIGAAAAASTGGGGGGPFAANQARTTYDTVLKEFLVMYRGLGLLARLKGMRGTRGGAVPWHVAAAMRGVKALERCV |
Length | 1764 |
Position | Kinase |
Organism | Macrophomina phaseolina (strain MS6) (Charcoal rot fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetes incertae sedis> Botryosphaeriales> Botryosphaeriaceae> Macrophomina. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.413 |
Instability index | 45.13 |
Isoelectric point | 5.05 |
Molecular weight | 188697.41 |
Publications | PubMed=22992219 |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP30044 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 179.44| 47| 50| 71| 118| 1 --------------------------------------------------------------------------- 31- 68 (44.29/19.64) ..........LDATTAKAAELDGL...SCVEARLREA..KrLVYLDRQKTVLW 71- 118 (74.75/41.77) EPGT..SPPALDHGSLQSQQLNGLQlSSQSEGDIKAA..D.LARLAGRHHSLS 121- 168 (60.39/29.43) QAGGqyGSTASNARALQAANIRAFQ.SNQQGSGVSAAnsD.ATR...QHDPLS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 284.28| 48| 50| 1585| 1632| 2 --------------------------------------------------------------------------- 1467- 1509 (67.39/25.42) STPGGNTPQPGVSPDAHGFTPAATPSDGNTSAPA......VDP.AND.PDA 1527- 1575 (55.36/19.55) LHNSNSTTEFRPALASGYLIKRGADSNTDALA.SSTG.KSDNPdTPRgPVA 1585- 1632 (80.81/31.96) STPGGHTPQRAAAAAAAAQAQAAAAAHAAAQAHAHTH.QSATP.TPT.PSA 1638- 1681 (50.59/17.22) SIPLQHL.EAAAAAAGGASGNGNVASSAGATGGMGSNiNSPLP.SP..... 1683- 1712 (30.13/ 7.24) ...GGAMGQGIGAAAAASTGGGGGGPFAANQAR.................. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 125.05| 43| 51| 597| 647| 3 --------------------------------------------------------------------------- 597- 647 (56.56/48.35) V.SQPATFEEQQQDTSPAEAkFEDasPVVQVS.GQVHAEEEpVtyksEITATP 649- 693 (68.48/34.85) VpSADIEMSEPKDETKPGDI.FQD..PEIQVDePKGEAEEE.V....QITREP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 97.96| 24| 50| 354| 377| 4 --------------------------------------------------------------------------- 354- 377 (49.13/33.42) PSATLCRECLWPAALCFFYGPIRE 406- 429 (48.83/33.17) PSKQGFTDPLWQAYNWFLGKPERE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 152.66| 49| 51| 716| 766| 5 --------------------------------------------------------------------------- 716- 766 (79.51/47.70) DTGAKDFAKTKAEGGAIFNTVDFNQMMQL.TDSKYAAGgqFHFPEKANGD.TM 769- 819 (73.15/38.28) MNYRSANLSIRAPPGQISRPTSSAQSLTLeSTSKFIRS..IVVPKHTSDDsTM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 145.97| 51| 53| 447| 498| 6 --------------------------------------------------------------------------- 447- 469 (28.18/ 7.33) .....................................QPTQEPTMAYPSSPLYSRGSAYG 470- 525 (84.92/39.81) DLQVVSGVYP....TPPDAVLPPNAGGHAAMDgllmsQPNQEFISQTGNTGTGADGSATA 526- 557 (32.87/ 9.88) EHPAPPGTTPgehlDPSRAMNTPADGQDAEAD............................ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 69.02| 18| 47| 855| 872| 7 --------------------------------------------------------------------------- 855- 872 (34.62/19.87) LAPVHKKWGSSNAGTPMV 905- 922 (34.40/19.68) LEPGPSDWPLARLPPPMV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 146.13| 47| 50| 1103| 1152| 8 --------------------------------------------------------------------------- 1103- 1139 (42.26/33.69) ...................TNGPKNIMAYCVYPSSDQLkKPVTSfiDSISMAYESC 1140- 1186 (74.09/46.10) KFGSHVRGPDIEQ....iaTNG..RVSAFVNSGEGDHW.RPTAQ..NCLQAVRDTC 1188- 1223 (29.77/12.98) SLGRHLSRIDFKKhakaedSSTVDALVVYLVNPFSD.................... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 58.19| 22| 53| 1243| 1282| 11 --------------------------------------------------------------------------- 1243- 1281 (28.68/44.85) PSVPS..NRAvddskpelvlqlvpvkyIASFEAPVV.LEPSL 1295- 1319 (29.51/10.83) PREPShdHTA.................LSIYSAPSIqLEESL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FEDMDEEMFGGNDVTEADFNFFDD 2) IHEKLF | 563 702 | 586 707 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab