<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30038

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMPLMMDDEMDMDDLFGDGGGLSLPSRPPPTKELHQRIDELRTGGCCQGIAWSRWGCIASIAPNGMALELRNLRCDPADGTWALSSPTVTANFSSPLDGRLKHLSWSPTGSDLAVIDTTGRVTIISIFASLNKASLSRDCRADPADDLHGVIGCYWLNLAAYPANRPNILHGPAIKEGSGYRFESSQTPVLGPCLPNQSRSAFVCVTTNGTLRVLWQQNNSKWNESHTELESIVSSDDLITHAAICSDKNGTLLIAYTTASMQLRTVRALIEWNQPKVDKVPPANLPLNPTIKTRHLAGTSWAPTISSDPMNTSPFDSSMVQISHLELLPPFADANSKSVPPTIITIRSSLPTFAAHYTQDVHTTVDRWEIRDKIQSVHHAFEQLSSRRNGAGHPPQPVVYLKKLESFTVKKVVVSMESINHGKVIAFACSDNSIEYRDRTDMSETFNDGNLERVWHLSQIGFAYTDDEPCLQVSLSPTYCSAVQLRNDGKVKWKQLNYHLRQIGTSTDDPLYSAAIAAITLSCATAVMRNANWDDILATIQPYATAQFAYDWLADFTPLIKLNADFSEETHHDVLVRNTTIQLCLCIQYSIGFKGEFNPRTFSGKLAWLVLQLRSIVVVVTMAANLHLPGPGGPNANERTTPLEDPEVINSLVGSVRWALDLVAWIIDTLLTLPTTLPPHITLTNASTLSLPDLLSYLHKTNTISLHLLLSSPSRGFLTAVCRRLQHLDFIACKAVLHNNATLEPNPANPNPSPPTKVSPALKAAYVQIAQLTGSSILNIKTLETLLASITSLIKNSYASSTNPVLSGSAPAERTRNNIEMKMLFGSSFPDAFKPVIVELFRKEGLLDGVKEQIDSSQLFFADFSMLEVDENKASVERRRRSEKTMDCFRKVWLENPPKGLAAEVNGRQGRWRRCARCAAVMEDVLTQRQALQWLIMQQRSLYIKLVHDVGDLSAVWSVGNNALCKFRYIEEGATPESVTSNFVRDQRPSFEIPKVLHHAFGSDRSYLFLRRVPGRTLDTAWQSLNEYWKRHYVNAIVDVCKEMAEWKGAGLGGLDDQNRLECYLGTPRGGSGFGSANIEAGCKEIGMDCSVILYHADLGPTTIIVEDEPIPGRVGIVDFLKLLVTSLWAGSSPSFDSPPGWTYLLQARVARLGGEQKFQKRLE
Length1164
PositionTail
OrganismMarssonina brunnea f. sp. multigermtubi (strain MB_m1) (Marssonina leaf spot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Dermateaceae> Marssonina.
Aromaticity0.08
Grand average of hydropathy-0.182
Instability index45.35
Isoelectric point6.44
Molecular weight128700.23
Publications
PubMed=22876864

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30038
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     361.54|     105|     111|     526|     635|       1
---------------------------------------------------------------------------
  470-  551 (98.71/62.23)	................................CLQVSL.....SPTYCSAVQ.L.RN.DGKVKWkqLNYHLRQIGTSTddpLYSAAIAA.ITLSCATAVMRNANWDDILATIQPYATAQFAYD
  552-  661 (167.54/128.72)	WLADftPLIKLNADFSEethHDVLVRNTTIQLCLCIQY.....SIGFKGEFN.P.RTFSGKLAW..LVLQLRSIVVVV...TMAANLHL.PGPGGPNANERTTPLEDPEVINSLVGSVRWALD
  665-  751 (95.29/61.19)	WIID..TLLTLPTTLPP...HITLTNASTLSLPDLLSYlhktnTISLHLLLSsPsRGFLTAVCR..RLQHLDFIACKA...VLHNNATLePNPANPN..........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.32|      19|     111|      21|      45|       2
---------------------------------------------------------------------------
   21-   45 (31.64/31.52)	LSLPSRPPPTKELHQRIdelrtgGC
  135-  153 (37.67/22.43)	LSRDCRADPADDLHGVI......GC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.82|      20|     111|     283|     339|       3
---------------------------------------------------------------------------
   90-  111 (37.11/ 7.19)	ANFssPLDGRLK..HL...SWSPT.GSD
  283-  308 (26.71/74.46)	ANL..PLNPTIKtrHLagtSWAPTiSSD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30038 with Med16 domain of Kingdom Fungi
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