<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30032

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMASQDLPLDEIQWKSTVLAQQMQGVHENSVLHYFSHSPFFDQTSNNAILASQATFNPNLFEVLQTRAAFEGRLKTMSGLEFVIAEQPEEMAPGTGTGIWVIRKQTRRKVPSEEDEITIHSNYFVVGDNIYMASTVADILCNRTMAIISSLNKVATSMTTLPDFSPALGHVYIPPPTSKRGKNVEPQLSRASKENTPLPEPLQASQKPPPAAATIGSNYLDNRVLEEAINASMTYGDDYMDAIPVTGQPGDFHFSSTGREAKDKLMVPGPVKGPLHVPSKTAKPVPAPSPLKTNIPAERKGSKAEKSPKTPGMAKPKRRKSKAVGATPAASPKA
Length333
PositionHead
OrganismMarssonina brunnea f. sp. multigermtubi (strain MB_m1) (Marssonina leaf spot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Dermateaceae> Marssonina.
Aromaticity0.06
Grand average of hydropathy-0.455
Instability index56.68
Isoelectric point9.10
Molecular weight36071.68
Publications
PubMed=22876864

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364143
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP30032
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.05|      33|      40|     257|     289|       1
---------------------------------------------------------------------------
  215-  243 (33.30/10.78)	GSNYLDNRVLEEAINASMTYGDDYMDAIP....
  257-  289 (56.78/22.27)	GREAKDKLMVPGPVKGPLHVPSKTAKPVPAPSP
  300-  331 (48.97/18.45)	GSKAEKSPKTPGMAK.PKRRKSKAVGATPAASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.92|      23|      34|     150|     175|       2
---------------------------------------------------------------------------
  150-  175 (34.45/25.27)	LNKVATSMTTLPDfsPaLGHVYIPPP
  187-  209 (42.47/20.99)	LSRASKENTPLPE..P.LQASQKPPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30032 with Med6 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GHVYIPPPTSKRGKNVEPQLSRASKENTPLPEPLQASQKPPPAAATIGSN
2) PVTGQPGDFHFSSTGREAKDKLMVPGPVKGPLHVPSKTAKPVPAPSPLKTNIPAERKGSKAEKSPKTPGMAKPKRRKSKAVGATPAASPKA
168
243
217
333










Molecular Recognition Features






MoRF SequenceStartStop




1) SPLKTNIPAERKGSKAEKSPKTPGMAKPKRRKSKAVGATPAASPKA
288
333