<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30030

Description Uncharacterized protein
SequenceMETTHLMEDLSLRNPSPSPDEEQTTGVQSHSDSDRSLSSDLQSHSDSDYAPSSDLHSRSDSDRAPSSDLPPNNPSHHLPTTGPPSLAPSVISPLATPTPESSPAPIEWGPGAFAIGNEPRPIEFSSDAFIDREERAVAAVLTHFKNLVALAAEPLPEGAPREVAAAQGMQMDVEMKGLVRAAEDLLQLSRELKELWLFGPLRGLEEGEEEGQMDEDSQKVGEMVEDMLKQAADLTAKKV
Length239
PositionHead
OrganismMarssonina brunnea f. sp. multigermtubi (strain MB_m1) (Marssonina leaf spot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Dermateaceae> Marssonina.
Aromaticity0.03
Grand average of hydropathy-0.606
Instability index66.57
Isoelectric point4.40
Molecular weight25781.13
Publications
PubMed=22876864

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30030
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.03|      24|      25|      18|      41|       1
---------------------------------------------------------------------------
   18-   41 (42.42/20.50)	SPDEEQTTGVQSHSDSDRSLSSDL
   46-   69 (41.60/19.99)	DSDYAPSSDLHSRSDSDRAPSSDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.16|      11|      14|     103|     113|       2
---------------------------------------------------------------------------
  103-  113 (23.90/11.18)	PAPIEWGPGAF
  119-  129 (20.25/ 8.58)	PRPIEFSSDAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.79|      26|      40|     167|     192|       4
---------------------------------------------------------------------------
  167-  192 (40.81/23.21)	QGMQMDVEMKGLVRAAEDLLQLSREL
  193-  210 (20.86/ 9.02)	KELWLFGPLRGLEEGEEE........
  212-  234 (31.12/16.31)	...QMDEDSQKVGEMVEDMLKQAADL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30030 with Med22 domain of Kingdom Fungi
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