<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30008

Description F-box-like/WD repeat-containing protein TBL1XR1
SequenceMSFTSDEVNFLVYRYLQESGFVHSAYTFGIESHISQSNINGALVPPAALLNIIMKGLQYTEAEISIGEDGAQAKNIEALTLIDAVMPDVVESKKQAAQPAPKIKTEPASTNGEEATPAEIANHTDAMEVEVGQEIPTNKATVLRGHESEVFICAWNPTNDLLASGSGDSTARIWNMNDNSCYSANQLVLRHCIQKGGTEVPSNKDVTSLDWNCEGTLLATGSYDGYARIWSTEGRLVNTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDASSGNCTQQFAFHSAPALDVDWQSNATFASCSTDQCIHVCRLGMERPMKTFQGHTNEVNAIKWDPQGQLLASCSDDMTLKIWSMRQDPCVHDLQAHSKEIYTIKWSPTGPGTNNPNVPLILSSASFDSTVRLWEVEQGRCLHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNVQSGQLVHSYRGTGGIFEVCWNHRGDKVGASASDGSTIVLPSEGTSQPQREAQSPAHIITAPCHTQAVQCFPLKHSVH
Length526
PositionTail
OrganismCrassostrea gigas (Pacific oyster) (Crassostrea angulata)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Bivalvia> Autobranchia> Pteriomorphia> Ostreida> Ostreoidea> Ostreidae> Crassostrea.
Aromaticity0.08
Grand average of hydropathy-0.327
Instability index44.62
Isoelectric point5.58
Molecular weight57452.67
Publications
PubMed=22992520

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30008
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     423.35|      40|      40|     300|     339|       1
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  133-  176 (52.14/28.41)	QEIPTNkatVLRGHESEVFICAWNPTN.........dlLA.SGSGDSTARI.WNM.
  198-  234 (39.31/19.67)	TEVP........SN.KDVTSLDWNCEG.........tlLA.TGSYDGYARIwSTEG
  235-  274 (41.77/21.34)	..RLVN...TLGQHKGPIFALKWNKRG..........nYIlSAGVDKTTII.WDAS
  275-  315 (53.79/29.54)	SGNCTQ...QFAFHSAPALDVDWQSNA..........tFA.SCSTDQCIHV.CRLG
  316-  357 (62.90/35.75)	MERPMK...TFQGHTNEVNAIKWDPQG.........qlLA.SCSDDMTLKI.WSMR
  358-  408 (56.81/31.60)	QDPCVH...DLQAHSKEIYTIKWSPTGpgtnnpnvpliLS.SASFDSTVRL.WEVE
  409-  450 (62.91/35.76)	QGRCLH...TLTKHQEPVYSVAFSPDG.........kyLA.SGSFDKCVHI.WNVQ
  451-  492 (53.72/29.49)	SGQLVH...SYRG.TGGIFEVCWNHRG........dkvGA.SASDGSTIVL.PSEG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30008 with Med16 domain of Kingdom Metazoa
Unable to open file!