<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29980

Description Cyclin-C
SequenceMEKKENQEFGVISNSRLMTTCQTVVKNKFSHAYPQEYPYRINSVLECEFFLLEMMDCCLVLYHPYRPLTEYFKELAHEDSLYPLAWRIINDSLRTDVCLLYPPYLIALACLHIASVIQQKDLKQWLAECSVDMDKSIIATRCRCSATGQSAKCCVMRKHIMGKPTDFCSSFQKTEQN
Length177
PositionKinase
OrganismCrassostrea gigas (Pacific oyster) (Crassostrea angulata)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Bivalvia> Autobranchia> Pteriomorphia> Ostreida> Ostreoidea> Ostreidae> Crassostrea.
Aromaticity0.10
Grand average of hydropathy-0.189
Instability index42.07
Isoelectric point6.92
Molecular weight20587.78
Publications
PubMed=22992520

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29980
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.99|      18|      23|     127|     145|       1
---------------------------------------------------------------------------
  127-  145 (30.09/19.17)	AECSVdMDKSIIATRCR.CS
  151-  169 (32.90/16.76)	AKCCV.MRKHIMGKPTDfCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.83|      18|      23|      48|      70|       2
---------------------------------------------------------------------------
   39-   64 (24.35/22.90)	YR..insvlecefF.LLEMM......DCCLvLYHP
   65-   83 (20.98/14.53)	YRPL......teyFkELAHE......DS...LY.P
   86-  103 (20.50/10.67)	WRII................ndslrtDVCL.LYPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29980 with CycC domain of Kingdom Metazoa
Unable to open file!