<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29969
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MCLDRKLKISWSKNGFIAYSDLTPTSNLSITKLESIKGSSWRLSPKKIYQIKTNPLSSLNPITNVYWSTSGMDLAIIDDLGNLTILSTGVLKTNSSHQLSCFEDVDIIYQDDVCERPLNTKQPKLLNSSQNGGDSTTKVISFKWLNVDKPIISNSPAVRVHTTQESMVSSGAAADGAAASSDSSGYAYSYAVHQYKSYGILHPIQGKSGFFAVRRNGEVDFYYQATVQGSDFQKTSVLLEDVDNINSLWLKHADIGFNRDGSLIVATYSPLVKALRVYQVKIDWGTVSSTTKLSPKLSVVKLVSEPLNIIGDNGFPQELNGIDIISPNFSLDTELEILLTFNGPGVVGGKTLLKKLQLSNEFKNLRFKNDGFNNDSAITVENYTNLASTGDILLQQEVLDISFKNFEFIIAITLANGEIQLRNRKSLNLLGNKNNEPIPQSISTLLDAGYEFPLPGFKPDAVSISPNICGYVVYNPHDRLLKYHTTSRPTSNLVKGEVLTLSAAFGYKYSSACFTNLSSDDLIIAIQSEIFKIKDTQLKNQLILAILEESHRALNFSLDHSKDQIDRLLVNPPIQKLLSLQYSLGKLTSTNETTLIALSILNLRLVAFSLMLSLRTLFHHQQRVTKKGNESLMDSIYRSESVLSTLGTINWFMEFLIFTVQELINVVHSDDLQDKSHFNTIMLSLLLSKIPRSLMVYSIAGIKRIDGFLVKVQDLNNTSNPGSLNMEVLNKSIERYKHLLTLIDLDKFEKFLSDTENLFHRQLDKSSALSIEQTLVFQNKIPSGYQVSIDAMLNKFQELLQDSPNLSELYFHDTRWLNLQIRTNKNPSKIFKGPEDKVPILFGTNETLIDDVTKVVITNKEKLKKCLRCEYITSNDTEGYFSSSIKGASSNANLNHWPVAFHRTCLCGSCWVYITPNEVSQGF |
Length | 923 |
Position | Tail |
Organism | Wickerhamomyces ciferrii (strain F-60-10 / ATCC 14091 / CBS 111 / JCM 3599 / NBRC 0793 / NRRL Y-1031) (Yeast) (Pichia ciferrii) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Phaffomycetaceae> Wickerhamomyces.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.159 |
Instability index | 29.21 |
Isoelectric point | 7.01 |
Molecular weight | 103228.57 |
Publications | PubMed=23193139
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP29969
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 178.93| 43| 53| 632| 676| 1
---------------------------------------------------------------------------
592- 628 (33.49/19.57) ........ETTLIALSILNLrLVAFsLMLSLRTLFH..HQQRVTKKG
632- 676 (69.19/55.75) LMDSIYRSESVLSTLGTINW.FMEF.LIFTVQELINvvHSDDLQDKS
686- 719 (50.78/33.95) LLSKIPRSLMVYSIAG.IKR.IDGF.LV.KVQ.........DLNNTS
729- 752 (25.47/12.23) LNKSIERYKHLL.TLIDLDK.FEKF.L....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 100.83| 32| 55| 11| 44| 2
---------------------------------------------------------------------------
11- 44 (53.75/39.66) WSKNGF.IAYSDltPTSNLSITKLESIKG.SSWRLS
67- 100 (47.09/28.42) WSTSGMdLAIID..DLGNLTILSTGVLKTnSSHQLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 101.37| 33| 35| 287| 320| 4
---------------------------------------------------------------------------
287- 320 (48.44/35.76) VSSTTKLSPKLSVVKLVSEPlNIIGDNGFPQELN
325- 357 (52.93/34.61) ISPNFSLDTELEILLTFNGP.GVVGGKTLLKKLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 159.09| 50| 319| 146| 214| 5
---------------------------------------------------------------------------
161- 214 (78.48/76.00) HTTqeSMVSSGAAADGAAASSDSSGYAYSYAVH.QYKSYGILHPIQgkSGFFAVR
484- 534 (80.61/40.93) HTT..SRPTSNLVKGEVLTLSAAFGYKYSSACFtNLSSDDLIIAIQ..SEIFKIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 74.66| 22| 112| 250| 271| 6
---------------------------------------------------------------------------
250- 271 (38.47/22.25) LKHADIGFNRDGSLIVATYSPL
365- 386 (36.18/20.52) LRFKNDGFNNDSAITVENYTNL
---------------------------------------------------------------------------
|